Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 4.6e-135 484.6 247 100.0
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.8e-110 402.9 229 88.6
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 6.5e-97 357.8 223 86.1
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 6.8e-94 347.8 243 72.0
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 3.4e-93 345.5 243 71.6
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 6.3e-92 341.3 243 71.6
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 1.7e-89 333.2 231 74.5
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 2.8e-84 315.8 230 71.7
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 3.1e-83 312.4 244 67.2
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 9.1e-83 310.8 244 66.4
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 9.1e-83 310.8 243 69.5
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 7.8e-74 281.2 174 75.9
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.9e-72 276.6 227 61.7
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 4.3e-72 275.4 197 67.0
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 2.1e-71 273.1 228 62.3
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 4.0e-70 268.9 227 58.6
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.0e-70 268.9 223 61.0
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 4.0e-70 268.9 178 71.3
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.2e-69 267.3 205 63.9
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 1.5e-69 266.9 205 64.9
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 2.9e-68 262.7 218 61.5
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 3.7e-68 262.3 226 61.9
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 8.3e-68 261.2 165 74.5
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 1.1e-67 260.8 219 63.5
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 2.4e-67 259.6 227 59.0
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 7.0e-67 258.1 190 67.4
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 2.0e-66 256.5 176 69.3
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 3.5e-66 255.8 173 71.1
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 3.5e-66 255.8 173 71.1
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 6.0e-66 255.0 234 57.3
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 6.0e-66 255.0 189 64.0
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 1.0e-65 254.2 230 57.4
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.3e-65 253.8 189 66.7
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 1.7e-65 253.4 214 58.9
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 1.7e-65 253.4 221 54.3
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 3.9e-65 252.3 206 58.3
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 5.0e-65 251.9 180 67.2
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 5.0e-65 251.9 171 69.6
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 6.6e-65 251.5 171 69.6
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 8.6e-65 251.1 175 69.7
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.9e-64 250.0 175 68.6
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 1.9e-64 250.0 190 62.6
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.5e-64 249.6 180 66.1
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 5.6e-64 248.4 177 67.2
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 5.6e-64 248.4 199 59.3
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 7.3e-64 248.1 175 65.7
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.6e-63 246.9 210 60.5
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.1e-63 246.5 189 63.0
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.1e-63 246.5 189 63.0
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 2.8e-63 246.1 173 67.6
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 3.6e-63 245.7 189 63.5
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.6e-63 245.7 175 67.4
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 3.6e-63 245.7 207 58.0
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 6.2e-63 245.0 178 66.9
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 8.1e-63 244.6 237 53.2
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 8.1e-63 244.6 220 56.4
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 1.1e-62 244.2 189 64.6
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 1.4e-62 243.8 189 63.0
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 2.3e-62 243.0 201 60.7
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.3e-62 243.0 201 60.7
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.1e-62 242.7 208 59.1
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.1e-62 242.7 201 60.7
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 4.0e-62 242.3 205 58.5
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 8.9e-62 241.1 189 61.4
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 8.9e-62 241.1 189 61.4
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 8.9e-62 241.1 189 61.4
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.9e-62 241.1 208 59.1
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.2e-61 240.7 242 51.2
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.2e-61 240.7 178 65.2
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.2e-61 240.7 179 63.7
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.2e-61 240.7 190 61.1
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 1.5e-61 240.4 224 56.7
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 1.5e-61 240.4 189 60.8
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 2.0e-61 240.0 234 53.8
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 2.0e-61 240.0 175 65.1
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 3.4e-61 239.2 189 60.3
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 4.4e-61 238.8 189 60.3
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 7.5e-61 238.0 175 64.0
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.5e-61 238.0 208 58.7
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 3.7e-60 235.7 279 48.7
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 3.7e-60 235.7 175 65.1
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 1.9e-59 233.4 177 63.3
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 3.5e-58 229.2 173 64.7
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 3.5e-58 229.2 204 55.9
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 4.6e-58 228.8 171 59.6
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 6.0e-58 228.4 178 58.4
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 7.8e-58 228.0 197 57.4
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.3e-57 227.3 197 56.3
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.3e-57 227.3 175 61.1
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 6.6e-57 224.9 175 61.1
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 2.5e-56 223.0 178 57.9
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 7.3e-56 221.5 205 53.7
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 2.0e-53 213.4 224 50.0
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 3.4e-53 212.6 236 49.2
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 7.6e-53 211.5 240 47.9
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 5.4e-51 205.3 172 58.1
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 3.5e-50 202.6 179 57.5
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 1.3e-49 200.7 166 56.6
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.7e-49 200.3 187 51.9
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.5e-48 197.2 208 51.4
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.8e-47 193.0 175 56.0
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 4.4e-45 185.7 198 50.5
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 9.0e-38 161.4 128 63.3
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 1.1e-35 154.5 105 69.5
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 2.4e-35 153.3 217 43.3
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 3.2e-35 152.9 135 52.6
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.8e-30 137.1 140 53.6
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 5.3e-30 135.6 101 58.4
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 5.3e-30 135.6 101 58.4
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.2e-29 134.4 177 41.2
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 1.1e-27 127.9 174 42.0
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.0e-25 121.3 180 37.8
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 5.1e-25 119.0 100 65.0
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.3e-20 104.4 172 37.2
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 3.8e-20 102.8 139 39.6
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 2.1e-18 97.1 144 40.3
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.7e-18 96.7 124 45.2
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.1e-16 91.3 140 37.1
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-15 87.0 106 43.4
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 3.7e-15 86.3 156 35.9
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 8.2e-15 85.1 74 56.8
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 4.1e-14 82.8 173 32.9
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-12 77.8 94 42.6
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.7e-12 77.4 50 76.0
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.2e-12 77.0 93 41.9
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 4.6e-10 69.3 43 74.4


User provided reference genes

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