Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 0.0e+00 1093.2 1300 100.0
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 1.3e-90 339.3 1267 39.2
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 6.1e-69 267.3 273 60.4
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 8.3e-66 256.9 1324 39.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 9.4e-62 243.4 280 55.0
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 3.6e-53 214.9 247 52.2
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 8.0e-53 213.8 181 68.5
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 2.3e-52 212.2 181 68.0
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.8e-49 202.6 170 69.4
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 2.4e-49 202.2 170 68.8
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.0e-48 199.1 238 51.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.3e-47 195.7 262 48.5
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 4.3e-46 191.4 269 46.5
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.3e-39 169.1 281 42.7
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 3.3e-38 165.2 289 41.9
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 7.3e-38 164.1 273 42.1
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 2.1e-37 162.5 206 51.9
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.2e-29 136.7 294 39.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 8.1e-29 134.0 295 38.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.1e-28 133.7 333 35.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.1e-28 133.7 309 36.9
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 2.2e-26 125.9 285 36.5
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 6.4e-26 124.4 163 52.8
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 7.1e-25 120.9 299 35.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 9.2e-25 120.6 216 40.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.5e-24 118.6 301 35.9
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 4.6e-24 118.2 283 37.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 7.8e-24 117.5 327 34.3
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.3e-23 116.7 268 36.2
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 3.9e-23 115.2 250 37.2
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 8.6e-23 114.0 220 40.9
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.5e-22 112.5 223 40.4
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.6e-22 111.3 210 38.6
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 7.3e-22 110.9 261 36.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.2e-21 110.2 192 42.2
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.6e-21 109.8 223 40.4
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.6e-21 108.6 309 33.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.5e-19 103.2 230 37.0
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.6e-19 102.4 228 37.7
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 5.8e-19 101.3 231 39.0
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.3e-18 100.1 193 38.3
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.7e-18 99.8 229 38.9
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.4e-17 96.7 257 35.8
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 4.2e-17 95.1 214 39.3
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 5.4e-17 94.7 318 32.4
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 2.1e-16 92.8 314 29.9
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.0e-15 90.5 167 40.1
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.3e-15 90.1 316 32.9
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.3e-15 90.1 257 33.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.7e-15 89.7 298 32.2
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 2.3e-15 89.4 179 39.1
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 3.0e-15 89.0 204 37.3
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 5.1e-15 88.2 233 35.6
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 6.6e-15 87.8 342 28.1
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.9e-14 86.3 358 28.8
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.5e-14 85.9 260 34.6
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 3.3e-14 85.5 231 35.9
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 3.3e-14 85.5 200 37.0
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 3.3e-14 85.5 246 32.5
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 4.3e-14 85.1 192 35.9
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 7.3e-14 84.3 280 33.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 9.6e-14 84.0 91 49.5
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-13 82.8 110 53.6
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-13 82.8 110 53.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 3.6e-13 82.0 262 34.7
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.8e-13 81.6 297 31.6
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 6.2e-13 81.3 258 35.3
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 6.2e-13 81.3 303 32.3
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.4e-12 80.1 217 34.6
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.8e-12 79.7 150 45.3
Glyma.16G193050 Glycine max HOM05D004189 ORTHO05D004092 2.4e-12 79.3 65 70.8
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 2.4e-12 79.3 128 39.1
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 4.0e-12 78.6 283 30.4
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 5.3e-12 78.2 293 30.4
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.0e-12 77.4 238 34.5
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.5e-11 76.6 202 32.7
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 2.0e-11 76.3 111 40.5
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 5.8e-11 74.7 199 33.2
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.8e-11 74.7 208 32.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 7.6e-11 74.3 211 33.6
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.9e-11 73.9 81 56.8
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-10 73.6 259 33.6
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.3e-10 73.6 111 38.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.3e-10 73.6 199 34.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.7e-10 73.2 198 34.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-10 73.2 214 33.6
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 2.9e-10 72.4 212 32.1
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 3.8e-10 72.0 187 32.6
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 4.9e-10 71.6 259 33.2
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 6.4e-10 71.2 249 34.1
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 8.4e-10 70.9 166 38.0
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.4e-09 70.1 172 34.9
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.4e-09 70.1 288 29.2
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.9e-09 69.7 357 29.4
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.4e-09 69.3 246 28.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.2e-09 68.6 262 31.3
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 5.4e-09 68.2 230 33.5
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.1e-09 67.8 174 35.1
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 9.3e-09 67.4 172 33.7
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.2e-08 67.0 211 30.3
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 1.6e-08 66.6 228 35.5
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.6e-08 66.6 118 39.0
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.1e-08 66.2 233 33.0
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.1e-08 66.2 185 30.8
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 4.6e-08 65.1 260 27.3
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 6.0e-08 64.7 198 32.3
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 6.0e-08 64.7 257 31.5
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 7.8e-08 64.3 175 31.4
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.0e-07 63.9 269 32.0
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.3e-07 62.8 198 32.3
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-07 62.4 224 33.0
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.0e-07 62.4 90 48.9
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 5.1e-07 61.6 165 32.7
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 5.1e-07 61.6 286 27.6
TPR.G14317 Trifolium pratense HOM05D004189 ORTHO05D017062 8.7e-07 60.8 162 34.0
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 1.1e-06 60.5 89 37.1
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.5e-06 60.1 202 33.7
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.5e-06 60.1 194 33.0
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.5e-06 60.1 255 28.6
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.3e-06 58.5 251 29.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.3e-06 58.5 199 29.6
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 4.3e-06 58.5 243 28.8
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.6e-06 58.2 291 28.2
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.6e-06 57.4 272 29.8
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 9.6e-06 57.4 93 38.7
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.6e-06 57.4 393 26.2


User provided reference genes

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