Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G080500 Phaseolus vulgaris HOM05D000278 ORTHO05D004031 4.5e-49 197.6 98 100.0
Phvul.004G079800 Phaseolus vulgaris HOM05D000278 ORTHO05D004031 1.3e-16 89.7 182 39.0
VMungo0464G1078 Vigna mungo HOM05D000278 ORTHO05D004031 6.5e-16 87.4 182 38.5
Ca_25711_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 8.0e-14 80.5 182 33.5
Glyma.02G071900 Glycine max HOM05D000278 ORTHO05D004031 8.0e-14 80.5 182 35.2
Glyma.16G153200 Glycine max HOM05D000278 ORTHO05D004031 1.0e-13 80.1 182 35.2
Psat0s3407g0040 Pisum sativum HOM05D000278 ORTHO05D004031 5.2e-13 77.8 45 84.4
Ca_04492_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 1.2e-12 76.6 45 80.0
Medtr6g032870 Medicago truncatula HOM05D000278 ORTHO05D004031 1.2e-12 76.6 45 80.0
TPR.G34618 Trifolium pratense HOM05D000278 ORTHO05D004031 1.2e-12 76.6 48 77.1
Medtr1g030650 Medicago truncatula HOM05D000278 ORTHO05D004031 1.5e-12 76.3 48 75.0
TPR.G36870 Trifolium pratense HOM05D000278 ORTHO05D004031 3.4e-12 75.1 48 70.8
Lalb_Chr21g0316131 Lupinus albus HOM05D000278 ORTHO05D004031 1.7e-11 72.8 182 33.0
Lalb_Chr21g0316151 Lupinus albus HOM05D000278 ORTHO05D004031 1.7e-11 72.8 182 33.0
Psat0s2522g0160 Pisum sativum HOM05D000278 ORTHO05D004031 2.2e-11 72.4 45 75.6
Haze_19414 Corylus avellana HOM05D000278 ORTHO05D004031 2.8e-11 72.0 182 31.9
Ah.13g075330 Amaranthus hybridus HOM05D000278 ORTHO05D004031 3.7e-11 71.6 181 30.4
Sed0013215 Sechium edule HOM05D000278 ORTHO05D004031 3.7e-11 71.6 45 71.1
Cfa016437 Carpinus fangiana HOM05D000278 ORTHO05D004031 4.8e-11 71.2 182 31.9
Lj1g0028009 Lotus japonicus HOM05D000278 ORTHO05D004031 6.3e-11 70.9 48 68.8
MD17G1264600 Malus domestica HOM05D000278 ORTHO05D004031 1.1e-10 70.1 182 30.8
Peaxi162Scf00071g00913 Petunia axillaris HOM05D000278 ORTHO05D004031 1.1e-10 70.1 44 70.5
Nn7g35821 Nelumbo nucifera HOM05D000278 ORTHO05D004031 1.8e-10 69.3 44 75.0
PGSC0003DMG400006829 Solanum tuberosum HOM05D000278 ORTHO05D004031 1.8e-10 69.3 44 68.2
Dinv14581 Davidia involucrata HOM05D000278 ORTHO05D004031 3.1e-10 68.6 44 72.7
MELO3C026888.2 Cucumis melo HOM05D000278 ORTHO05D004031 4.1e-10 68.2 45 71.1
CsaV3_3G043280 Cucumis sativus L. HOM05D000278 ORTHO05D004031 4.1e-10 68.2 45 71.1
PSO339G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 5.4e-10 67.8 47 63.8
PSO384G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 5.4e-10 67.8 47 63.8
Cpa.g.sc51.110 Carica papaya HOM05D000278 ORTHO05D004031 7.0e-10 67.4 45 68.9
Manes.09G141800 Manihot esculenta HOM05D000278 ORTHO05D004031 7.0e-10 67.4 180 31.1
Peaxi162Scf01108g00120 Petunia axillaris HOM05D000278 ORTHO05D004031 7.0e-10 67.4 44 65.9
ATR0697G160 Amborella trichopoda HOM05D000278 ORTHO05D004031 9.1e-10 67.0 44 68.2
CAN.G410.8 Capsicum annuum HOM05D000278 ORTHO05D004031 9.1e-10 67.0 44 65.9
Migut.C00324 Erythranthe guttata HOM05D000278 ORTHO05D004031 9.1e-10 67.0 44 68.2
Nitab4.5_0006695g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004031 9.1e-10 67.0 44 65.9
PGR142G1170 Punica granatum HOM05D000278 ORTHO05D004031 9.1e-10 67.0 181 29.8
Solyc01g088080.3 Solanum lycopersicum HOM05D000278 ORTHO05D004031 9.1e-10 67.0 44 65.9
EL10Ac3g06816 Beta vulgaris HOM05D000278 ORTHO05D004031 1.2e-09 66.6 48 60.4
CSS0000727 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 1.2e-09 66.6 44 68.2
CSS0033021 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 1.2e-09 66.6 44 68.2
CSS0036387 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 1.2e-09 66.6 44 68.2
Nitab4.5_0002187g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004031 1.2e-09 66.6 44 65.9
Sed0026355 Sechium edule HOM05D000278 ORTHO05D004031 1.2e-09 66.6 44 72.7
TAR369G0685 Trochodendron aralioides HOM05D000278 ORTHO05D004031 1.2e-09 66.6 44 70.5
GSVIVG01033394001 Vitis vinifera HOM05D000278 ORTHO05D004031 1.2e-09 66.6 44 70.5
BolC1t05791H Brassica oleracea HOM05D000278 ORTHO05D004031 1.6e-09 66.2 49 63.3
BolC1t05795H Brassica oleracea HOM05D000278 ORTHO05D004031 1.6e-09 66.2 49 63.3
AUR62032060 Chenopodium quinoa HOM05D000278 ORTHO05D004031 1.6e-09 66.2 182 29.1
AUR62032687 Chenopodium quinoa HOM05D000278 ORTHO05D004031 1.6e-09 66.2 182 29.1
Dinv37012 Davidia involucrata HOM05D000278 ORTHO05D004031 1.6e-09 66.2 44 70.5
Duzib177G1081 Durio zibethinus HOM05D000278 ORTHO05D004031 1.6e-09 66.2 44 68.2
Eucgr.A02095 Eucalyptus grandis HOM05D000278 ORTHO05D004031 1.6e-09 66.2 45 68.9
CiPaw.06G089700 Carya illinoinensis HOM05D000278 ORTHO05D004031 2.0e-09 65.9 45 66.7
CiPaw.09G001600 Carya illinoinensis HOM05D000278 ORTHO05D004031 2.0e-09 65.9 45 66.7
TWI32G0619 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 2.0e-09 65.9 45 68.9
CANSAT25G3570 Cannabis sativa HOM05D000278 ORTHO05D004031 2.7e-09 65.5 48 64.6
Potri.019G034200 Populus trichocarpa HOM05D000278 ORTHO05D004031 2.7e-09 65.5 182 28.6
Hund19239 Selenicereus undatus HOM05D000278 ORTHO05D004031 2.7e-09 65.5 182 28.6
vmacro12568 Vaccinium macrocarpon HOM05D000278 ORTHO05D004031 2.7e-09 65.5 45 68.9
BcaC09g47768 Brassica carinata HOM05D000278 ORTHO05D004031 3.5e-09 65.1 44 70.5
A01p41240 Brassica napus HOM05D000278 ORTHO05D004031 3.5e-09 65.1 44 70.5
BNapus_Darmor_BZH_scaffold_78p00470 Brassica napus HOM05D000278 ORTHO05D004031 3.5e-09 65.1 44 70.5
BraA01t04547Z Brassica rapa HOM05D000278 ORTHO05D004031 3.5e-09 65.1 44 70.5
Ciclev10019583m.g Citrus clementina HOM05D000278 ORTHO05D004031 3.5e-09 65.1 181 29.8
Cc06_g22900 Coffea canephora HOM05D000278 ORTHO05D004031 3.5e-09 65.1 44 65.9
Rhsim01G0190500 Rhododendron simsii HOM05D000278 ORTHO05D004031 3.5e-09 65.1 45 66.7
Rhsim03G0001500 Rhododendron simsii HOM05D000278 ORTHO05D004031 3.5e-09 65.1 45 66.7
Thecc.05G294000 Theobroma cacao HOM05D000278 ORTHO05D004031 3.5e-09 65.1 182 28.6
ClCG10G013350 Citrullus lanatus HOM05D000278 ORTHO05D004031 4.5e-09 64.7 45 64.4
Gohir.A11G296700 Gossypium hirsutum HOM05D000278 ORTHO05D004031 4.5e-09 64.7 48 64.6
Gohir.D11G310200 Gossypium hirsutum HOM05D000278 ORTHO05D004031 4.5e-09 64.7 48 64.6
Gorai.007G343600 Gossypium raimondii HOM05D000278 ORTHO05D004031 4.5e-09 64.7 48 64.6
Hma1.2p1_1145F.1_g261380 Hydrangea macrophylla HOM05D000278 ORTHO05D004031 4.5e-09 64.7 44 68.2
Sp3g02930 Schrenkiella parvula HOM05D000278 ORTHO05D004031 4.5e-09 64.7 67 50.7
Sopen01g034950 Solanum pennellii HOM05D000278 ORTHO05D004031 4.5e-09 64.7 44 63.6
TWI34G1951 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 4.5e-09 64.7 45 66.7
EL10Ac5g12659 Beta vulgaris HOM05D000278 ORTHO05D004031 5.9e-09 64.3 48 60.4
Duzib106G1656 Durio zibethinus HOM05D000278 ORTHO05D004031 5.9e-09 64.3 182 28.6
Prupe.3G114000 Prunus persica HOM05D000278 ORTHO05D004031 5.9e-09 64.3 48 64.6
THA.LOC104802866 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 5.9e-09 64.3 44 68.2
CSS0002970 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 7.7e-09 63.9 44 63.6
MD09G1235600 Malus domestica HOM05D000278 ORTHO05D004031 7.7e-09 63.9 48 64.6
MD17G1264300 Malus domestica HOM05D000278 ORTHO05D004031 7.7e-09 63.9 48 64.6
SGA_v2.0_scaffold274G46518 Striga asiatica HOM05D000278 ORTHO05D004031 7.7e-09 63.9 44 61.4
THA.LOC104820734 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 7.7e-09 63.9 44 65.9
Gorai.007G288800 Gossypium raimondii HOM05D000278 ORTHO05D004031 1.0e-08 63.5 182 28.0
Manes.08G143700 Manihot esculenta HOM05D000278 ORTHO05D004031 1.0e-08 63.5 180 30.6
Potri.013G058500 Populus trichocarpa HOM05D000278 ORTHO05D004031 1.0e-08 63.5 44 65.9
Prupe.3G113600 Prunus persica HOM05D000278 ORTHO05D004031 1.0e-08 63.5 48 64.6
QL07p019694 Quercus lobata HOM05D000278 ORTHO05D004031 1.0e-08 63.5 45 64.4
Sabra13G0052100 Salix brachista HOM05D000278 ORTHO05D004031 1.0e-08 63.5 44 65.9
MSTRG.10861 Avicennia marina HOM05D000278 ORTHO05D004031 1.3e-08 63.2 47 57.4
A05p43400 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-08 63.2 48 62.5
COL.COLO4_13606 Corchorus olitorius HOM05D000278 ORTHO05D004031 1.3e-08 63.2 48 58.3
Gohir.A11G258900 Gossypium hirsutum HOM05D000278 ORTHO05D004031 1.3e-08 63.2 182 28.0
Gohir.D11G269000 Gossypium hirsutum HOM05D000278 ORTHO05D004031 1.3e-08 63.2 182 28.0
QL07p030735 Quercus lobata HOM05D000278 ORTHO05D004031 1.3e-08 63.2 45 64.4
Aa31LG5G14540 Aethionema arabicum HOM05D000278 ORTHO05D004031 1.7e-08 62.8 44 68.2
AL3G13870 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 1.7e-08 62.8 48 62.5
AL6G29410 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 1.7e-08 62.8 44 68.2
AT3G03960 Arabidopsis thaliana HOM05D000278 ORTHO05D004031 1.7e-08 62.8 48 62.5
BcaC05g29888 Brassica carinata HOM05D000278 ORTHO05D004031 1.7e-08 62.8 48 62.5
BcaC05g30297 Brassica carinata HOM05D000278 ORTHO05D004031 1.7e-08 62.8 48 62.5
C05p63100 Brassica napus HOM05D000278 ORTHO05D004031 1.7e-08 62.8 48 62.5
BolC3t16333H Brassica oleracea HOM05D000278 ORTHO05D004031 1.7e-08 62.8 44 65.9
BolC5t34962H Brassica oleracea HOM05D000278 ORTHO05D004031 1.7e-08 62.8 48 62.5
Carub.0003s0321 Capsella rubella HOM05D000278 ORTHO05D004031 1.7e-08 62.8 44 65.9
Gohir.D11G312410 Gossypium hirsutum HOM05D000278 ORTHO05D004031 1.7e-08 62.8 48 62.5
SalBow1G0837 Salvia bowleyana HOM05D000278 ORTHO05D004031 1.7e-08 62.8 45 60.0
SalBow8G1634 Salvia bowleyana HOM05D000278 ORTHO05D004031 1.7e-08 62.8 45 60.0
TAR623G0935 Trochodendron aralioides HOM05D000278 ORTHO05D004031 1.7e-08 62.8 44 65.9
A03p33480 Brassica napus HOM05D000278 ORTHO05D004031 2.2e-08 62.4 44 65.9
C03p40680 Brassica napus HOM05D000278 ORTHO05D004031 2.2e-08 62.4 44 65.9
BraA03t12523Z Brassica rapa HOM05D000278 ORTHO05D004031 2.2e-08 62.4 44 65.9
Migut.J01891 Erythranthe guttata HOM05D000278 ORTHO05D004031 2.2e-08 62.4 44 61.4
Lj1A1137T80 Lonicera japonica HOM05D000278 ORTHO05D004031 2.2e-08 62.4 44 56.8
BcaNung04528 Brassica carinata HOM05D000278 ORTHO05D004031 2.9e-08 62.0 44 65.9
RcHm_v2.0_Chr2g0130701 Rosa chinensis HOM05D000278 ORTHO05D004031 2.9e-08 62.0 48 62.5
Sabra19G0042100 Salix brachista HOM05D000278 ORTHO05D004031 2.9e-08 62.0 48 56.2
Zm00001eb200400 Zea mays HOM05D000278 ORTHO05D004031 2.9e-08 62.0 44 63.6
Atru.chr2.1362 Acer truncatum HOM05D000278 ORTHO05D004031 3.8e-08 61.6 45 66.7
Zm00001eb114320 Zea mays HOM05D000278 ORTHO05D004031 3.8e-08 61.6 44 63.6
MSTRG.26066 Avicennia marina HOM05D000278 ORTHO05D004031 5.0e-08 61.2 181 29.3
Lj8A582T9 Lonicera japonica HOM05D000278 ORTHO05D004031 5.0e-08 61.2 44 59.1
QL07p030356 Quercus lobata HOM05D000278 ORTHO05D004031 5.0e-08 61.2 45 62.2
Sc13g0002700 Simmondsia chinensis HOM05D000278 ORTHO05D004031 5.0e-08 61.2 181 28.2
C02p21770 Brassica napus HOM05D000278 ORTHO05D004031 6.5e-08 60.8 44 65.9
BolC2t08311H Brassica oleracea HOM05D000278 ORTHO05D004031 6.5e-08 60.8 44 65.9
BraA05t23080Z Brassica rapa HOM05D000278 ORTHO05D004031 6.5e-08 60.8 48 60.4
CARHR078090 Cardamine hirsuta HOM05D000278 ORTHO05D004031 6.5e-08 60.8 48 58.3
Thhalv10020448m.g Eutrema salsugineum HOM05D000278 ORTHO05D004031 6.5e-08 60.8 44 65.9
FvH4_6g27660 Fragaria vesca HOM05D000278 ORTHO05D004031 6.5e-08 60.8 48 60.4
FAN02G2614 Fragaria x ananassa HOM05D000278 ORTHO05D004031 6.5e-08 60.8 48 60.4
FAN05G2827 Fragaria x ananassa HOM05D000278 ORTHO05D004031 6.5e-08 60.8 48 60.4
FAN09G2390 Fragaria x ananassa HOM05D000278 ORTHO05D004031 6.5e-08 60.8 48 60.4
FAN14G1825 Fragaria x ananassa HOM05D000278 ORTHO05D004031 6.5e-08 60.8 48 60.4
unitig_899.g15071 Utricularia gibba HOM05D000861 ORTHO05D004031 6.5e-08 60.8 44 56.8
Aqoxy2G00582 Aquilegia oxysepala HOM05D000278 ORTHO05D004031 8.5e-08 60.5 44 65.9
DCAR_019879 Daucus carota HOM05D000278 ORTHO05D004031 8.5e-08 60.5 45 57.8
Os03g0804800 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004031 8.5e-08 60.5 44 63.6
ECA232G4643 Erigeron canadensis HOM05D000278 ORTHO05D004031 1.1e-07 60.1 44 59.1
Oeu012404.4 Olea europaea HOM05D000278 ORTHO05D004031 1.1e-07 60.1 43 62.8
Actinidia22085 Actinidia chinensis HOM05D000278 ORTHO05D004031 1.5e-07 59.7 47 59.6
Lsat_1_v5_gn_4_42920 Lactuca sativa HOM05D000278 ORTHO05D004031 2.5e-07 58.9 43 60.5
CDE01G0608 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 3.2e-07 58.5 44 61.4
PSO013G0403 Papaver somniferum HOM05D000278 ORTHO05D004031 5.5e-07 57.8 44 61.4
BolC6t38139H Brassica oleracea HOM05D000278 ORTHO05D004031 7.2e-07 57.4 44 61.4
PSO063G2497 Papaver somniferum HOM05D000278 ORTHO05D004031 1.2e-06 56.6 44 61.4
CDE05G1661 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 1.6e-06 56.2 44 59.1
Actinidia30554 Actinidia chinensis HOM05D000278 ORTHO05D004031 2.7e-06 55.5 47 55.3
HanXRQChr08g0227471 Helianthus annuus HOM05D000278 ORTHO05D004031 2.7e-06 55.5 43 55.8
SMO353G0351 Selaginella moellendorffii HOM05D000278 ORTHO05D004031 3.6e-06 55.1 43 58.1
C06p29780 Brassica napus HOM05D000278 ORTHO05D004031 6.1e-06 54.3 44 59.1


User provided reference genes

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