Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 1.1e-101 374.0 202 100.0
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 2.0e-87 326.6 203 89.2
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.7e-84 316.2 199 88.9
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 7.2e-82 308.1 205 84.9
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 7.2e-82 308.1 199 86.9
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.2e-81 307.4 203 85.2
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 2.1e-81 306.6 198 86.4
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 8.0e-81 304.7 202 83.2
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 2.3e-80 303.1 193 87.6
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 3.0e-80 302.8 203 82.3
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 4.0e-80 302.4 201 84.1
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 5.2e-80 302.0 198 85.4
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 8.9e-80 301.2 198 82.3
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.2e-79 300.8 195 85.1
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.6e-79 299.7 194 85.1
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 5.7e-79 298.5 199 81.9
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 9.8e-79 297.7 199 84.9
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 1.7e-78 297.0 199 81.4
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 2.9e-78 296.2 198 82.3
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 3.7e-78 295.8 195 83.1
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 4.9e-78 295.4 198 81.8
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.1e-77 294.3 195 83.1
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 5.4e-77 292.0 192 82.8
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.0e-77 291.6 194 82.0
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 9.2e-77 291.2 195 80.5
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.0e-76 290.0 195 80.5
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 3.5e-76 289.3 198 81.8
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 3.5e-76 289.3 202 78.7
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 3.5e-76 289.3 193 83.9
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 3.5e-76 289.3 222 74.3
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 5.9e-76 288.5 198 79.8
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 7.8e-76 288.1 198 81.3
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.0e-75 287.7 198 81.8
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 3.9e-75 285.8 198 82.3
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 7.3e-74 281.6 195 80.5
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.3e-74 281.6 190 79.5
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.2e-73 280.8 200 78.0
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 1.2e-73 280.8 196 80.1
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 1.2e-73 280.8 204 77.9
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.6e-73 279.3 198 73.2
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 8.0e-73 278.1 203 77.8
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 8.0e-73 278.1 203 76.4
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 8.0e-73 278.1 203 77.3
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 2.3e-72 276.6 208 77.9
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 8.9e-72 274.6 194 79.9
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 1.7e-70 270.4 198 77.8
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 3.7e-70 269.2 182 82.4
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 1.4e-69 267.3 198 78.8
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.9e-69 266.9 209 74.6
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.2e-69 266.2 198 75.3
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 5.4e-69 265.4 198 73.2
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 7.0e-69 265.0 198 75.8
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 2.7e-68 263.1 186 81.7
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 3.5e-68 262.7 201 73.1
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 3.5e-68 262.7 194 77.8
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-67 260.8 221 63.8
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 3.0e-67 259.6 201 72.6
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 3.9e-67 259.2 198 75.8
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 3.9e-67 259.2 198 73.7
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.1e-66 257.7 179 78.8
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 1.9e-66 256.9 194 74.2
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 1.9e-66 256.9 194 74.2
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-66 256.9 194 76.8
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.5e-66 256.5 192 75.5
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 5.6e-66 255.4 194 77.8
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 5.6e-66 255.4 193 75.6
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 5.6e-66 255.4 203 72.9
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 1.6e-65 253.8 201 71.1
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 1.6e-65 253.8 168 83.9
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 4.0e-64 249.2 190 73.7
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 5.2e-64 248.8 188 73.9
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 6.8e-64 248.4 198 73.7
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.2e-63 247.7 224 66.5
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.1e-61 241.1 171 79.5
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-61 240.0 179 77.7
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 3.2e-61 239.6 190 71.1
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 4.1e-61 239.2 165 78.8
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 1.2e-60 237.7 163 81.6
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 2.3e-59 233.4 197 69.5
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 3.9e-59 232.6 162 79.0
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 8.6e-59 231.5 155 84.5
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.5e-58 229.9 205 59.5
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.1e-57 226.9 197 66.0
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 1.1e-56 224.6 138 78.3
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 1.4e-56 224.2 171 73.7
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.8e-56 223.8 153 83.7
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 6.8e-56 221.9 167 75.4
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.0e-55 220.3 197 61.4
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 7.6e-55 218.4 217 62.7
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 3.7e-54 216.1 150 80.7
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 1.1e-53 214.5 135 78.5
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.4e-53 213.4 140 76.4
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.6e-52 210.7 152 77.6
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 2.7e-52 209.9 176 71.0
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.3e-51 207.6 186 66.1
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.1e-50 204.5 188 66.0
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 5.6e-50 202.2 188 60.6
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 7.3e-50 201.8 194 58.2
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.6e-49 200.7 203 60.6
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.8e-49 199.9 141 70.9
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 5.2e-48 195.7 184 64.7
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 4.4e-47 192.6 130 82.3
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.1e-45 188.0 189 60.3
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-45 186.8 173 59.0
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 3.2e-45 186.4 219 47.9
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 4.2e-45 186.0 201 53.7
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-44 183.7 176 62.5
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 3.0e-43 179.9 139 64.7
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-42 177.9 168 67.3
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 7.3e-42 175.3 174 55.7
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 7.3e-42 175.3 165 66.1
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 9.6e-42 174.9 139 66.9
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.8e-41 173.3 212 50.0
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 2.8e-41 173.3 134 67.2
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 3.6e-41 172.9 173 60.1
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.8e-41 172.6 135 64.4
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.8e-40 170.6 168 63.1
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 2.4e-40 170.2 188 59.6
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.0e-40 169.5 196 57.1
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 5.3e-40 169.1 175 62.9
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-39 167.9 160 62.5
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-39 167.9 182 54.9
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-36 157.5 170 62.4
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 2.7e-36 156.8 163 60.7
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-35 154.1 135 69.6
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 5.6e-34 149.1 110 67.3
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 6.2e-33 145.6 165 60.6
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.2e-33 145.6 163 50.9
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-32 144.4 134 58.2
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-32 144.4 135 59.3
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 4.0e-32 142.9 162 50.0
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 4.0e-32 142.9 116 63.8
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.8e-31 139.0 163 50.3
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 1.3e-30 137.9 86 80.2
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 1.3e-30 137.9 158 51.3
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-30 137.9 113 65.5
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.8e-30 136.3 179 44.1
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 8.4e-30 135.2 133 63.9
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 5.5e-29 132.5 86 77.9
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.6e-28 131.0 96 70.8
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.5e-28 129.8 398 32.4
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.6e-28 129.4 197 43.7
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 1.8e-24 117.5 108 55.6
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 5.3e-24 115.9 74 77.0
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 9.0e-24 115.2 90 63.3
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 2.0e-23 114.0 86 65.1
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.9e-21 107.5 104 55.8
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.5e-21 105.9 161 42.2
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 9.3e-21 105.1 182 47.8
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.3e-21 105.1 121 49.6
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 6.0e-20 102.4 104 54.8
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 6.0e-20 102.4 68 66.2
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.8e-17 92.8 70 61.4
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 9.0e-16 88.6 56 75.0
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-15 88.2 115 45.2
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.6e-15 87.0 139 41.0
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 1.0e-14 85.1 56 71.4
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.0e-14 85.1 203 38.9
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 7.2e-13 79.0 115 40.0
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.2e-13 79.0 115 40.0
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 7.9e-12 75.5 113 44.2
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 1.8e-11 74.3 118 38.1
FAN13G2987 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.8e-11 74.3 179 32.4
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.5e-10 70.5 44 77.3
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 3.7e-09 66.6 68 50.0
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 2.4e-08 63.9 39 82.1
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 3.1e-08 63.5 105 35.2
SMO356G0208 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 9.0e-08 62.0 116 34.5
Cre16.g679876 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D142177 1.5e-07 61.2 99 40.4
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 5.9e-07 59.3 78 48.7
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.0e-06 58.5 67 47.8
Manes.08G154400 Manihot esculenta HOM05D003950 ORTHO05D004697 1.7e-06 57.8 37 73.0


User provided reference genes

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