Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.4e-72 275.4 138 100.0
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 6.1e-68 260.8 138 94.2
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.2e-63 246.5 138 87.7
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 2.6e-63 245.4 138 87.7
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 2.6e-63 245.4 137 89.1
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.4e-61 239.6 136 86.8
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 7.2e-61 237.3 134 85.8
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 7.2e-61 237.3 137 86.1
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 7.2e-61 237.3 136 86.0
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 1.8e-59 232.6 135 85.2
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 1.5e-58 229.6 135 83.7
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 3.3e-58 228.4 131 85.5
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.3e-57 226.5 135 83.7
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.7e-57 226.1 134 82.8
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 3.7e-57 224.9 128 86.7
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 6.3e-57 224.2 128 85.9
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 3.1e-56 221.9 134 82.8
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 4.1e-56 221.5 134 79.9
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 7.0e-56 220.7 131 84.7
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 7.0e-56 220.7 137 82.5
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 7.0e-56 220.7 137 82.5
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 7.0e-56 220.7 133 82.7
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 9.1e-56 220.3 134 79.1
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.5e-55 219.5 134 81.3
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.0e-55 219.2 134 78.4
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.0e-55 219.2 134 78.4
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 2.6e-55 218.8 133 81.2
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 3.5e-55 218.4 135 79.3
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 3.5e-55 218.4 135 79.3
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 5.9e-55 217.6 134 80.6
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 7.7e-55 217.2 132 81.1
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 7.7e-55 217.2 136 79.4
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.3e-54 216.5 134 80.6
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.3e-54 216.5 133 81.2
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.3e-54 216.5 134 80.6
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.7e-54 216.1 134 79.9
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.7e-54 216.1 134 79.9
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 2.9e-54 215.3 134 77.6
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.9e-54 215.3 134 76.9
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 5.0e-54 214.5 134 79.9
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 8.5e-54 213.8 134 78.4
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 8.5e-54 213.8 134 78.4
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 8.5e-54 213.8 134 79.9
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.9e-53 212.6 135 78.5
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 1.9e-53 212.6 133 80.5
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 4.2e-53 211.5 133 78.9
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 4.2e-53 211.5 133 79.7
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 7.2e-53 210.7 135 77.8
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 9.4e-53 210.3 134 77.6
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 9.4e-53 210.3 134 76.9
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 9.4e-53 210.3 134 76.1
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 1.2e-52 209.9 133 78.9
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 1.6e-52 209.5 132 76.5
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.1e-52 209.1 135 77.0
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 2.1e-52 209.1 135 77.0
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 3.6e-52 208.4 139 74.1
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 4.7e-52 208.0 134 77.6
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 6.1e-52 207.6 134 73.1
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 8.0e-52 207.2 138 73.9
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 8.0e-52 207.2 119 85.7
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.0e-51 206.8 133 76.7
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 3.9e-51 204.9 139 75.5
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 6.7e-51 204.1 133 76.7
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.1e-50 203.4 134 73.9
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 3.3e-50 201.8 134 76.1
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 3.3e-50 201.8 131 74.0
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 4.4e-50 201.4 134 75.4
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 4.4e-50 201.4 134 74.6
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 5.7e-50 201.1 136 74.3
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 7.4e-50 200.7 133 73.7
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.7e-49 199.5 135 72.6
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 1.7e-49 199.5 134 73.1
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 1.7e-49 199.5 133 71.4
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.8e-49 198.7 132 74.2
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 2.8e-49 198.7 134 74.6
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 4.8e-49 198.0 135 71.9
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 4.8e-49 198.0 144 71.5
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 6.3e-49 197.6 133 70.7
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 8.2e-49 197.2 135 71.9
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 1.1e-48 196.8 132 72.0
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 1.4e-48 196.4 135 73.3
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.1e-48 195.3 135 73.3
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 5.3e-48 194.5 134 72.4
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 5.9e-47 191.0 134 71.6
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 5.9e-47 191.0 134 71.6
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 7.7e-47 190.7 133 70.7
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.7e-46 189.5 134 68.7
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 3.8e-46 188.3 147 66.0
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 3.8e-46 188.3 147 66.0
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 3.8e-46 188.3 147 66.0
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 3.8e-46 188.3 147 66.0
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 5.0e-46 188.0 135 71.1
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 5.0e-46 188.0 134 70.1
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 8.5e-46 187.2 132 70.5
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 1.9e-45 186.0 144 66.7
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 1.9e-45 186.0 139 66.2
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 3.2e-45 185.3 136 66.9
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-43 179.9 116 74.1
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 3.0e-43 178.7 116 71.6
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 4.0e-43 178.3 131 66.4
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 4.0e-43 178.3 131 66.4
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 6.8e-43 177.6 109 76.1
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 1.5e-42 176.4 115 72.2
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 2.0e-42 176.0 115 73.0
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 2.6e-42 175.6 115 73.0
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 3.4e-42 175.3 115 70.4
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 3.4e-42 175.3 115 70.4
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 3.4e-42 175.3 115 70.4
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 9.8e-42 173.7 116 70.7
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 9.8e-42 173.7 115 69.6
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 9.8e-42 173.7 115 69.6
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 9.8e-42 173.7 113 77.9
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 2.2e-41 172.6 114 71.1
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 3.7e-41 171.8 109 72.5
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 6.3e-41 171.0 108 73.1
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 6.3e-41 171.0 108 74.1
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 6.3e-41 171.0 112 71.4
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 1.1e-40 170.2 141 64.5
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 2.7e-39 165.6 126 65.1
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 2.9e-38 162.2 96 75.0
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 6.5e-38 161.0 118 73.7
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 3.0e-35 152.1 129 58.1
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 5.2e-35 151.4 90 73.3
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 7.0e-32 141.0 138 56.5
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 5.0e-30 134.8 85 72.9
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 1.9e-29 132.9 132 55.3
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 1.4e-27 126.7 118 56.8
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 9.8e-26 120.6 111 55.9
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 1.7e-25 119.8 74 83.8
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 3.7e-25 118.6 122 47.5
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 2.4e-24 115.9 136 50.0
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 3.2e-24 115.5 68 73.5
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 5.9e-23 111.3 81 75.3
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 6.6e-22 107.8 56 80.4
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 2.5e-21 105.9 75 76.0
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.0e-19 100.5 93 61.3
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 1.0e-19 100.5 70 65.7
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 1.4e-19 100.1 76 64.5
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 2.3e-19 99.4 115 46.1
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 2.9e-17 92.4 60 68.3
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 2.9e-17 92.4 127 42.5
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 2.7e-15 85.9 57 73.7
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 4.6e-15 85.1 56 71.4
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.2e-12 77.0 106 39.6
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 4.7e-12 75.1 140 39.3
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 3.1e-11 72.4 77 49.4
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.2e-10 70.5 79 54.4
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 1.1e-08 63.9 76 47.4


User provided reference genes

Program Settings