Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 9.3e-243 843.2 448 100.0
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.8e-201 706.1 445 84.0
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 1.5e-195 686.4 445 82.2
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.3e-191 673.3 444 81.8
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 2.7e-181 639.0 442 76.2
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 2.3e-177 625.9 442 74.2
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 9.8e-176 620.5 442 74.4
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 1.4e-174 616.7 442 74.7
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 7.5e-168 594.3 450 70.4
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 8.3e-167 590.9 443 65.0
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.2e-165 587.0 443 73.6
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 6.8e-161 571.2 431 68.9
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.6e-160 569.3 443 68.2
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 3.7e-159 565.5 443 63.2
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.4e-158 563.5 437 62.0
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 3.2e-158 562.4 426 68.5
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 5.4e-158 561.6 437 67.5
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 7.0e-158 561.2 424 63.0
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 9.2e-158 560.8 427 63.7
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 2.7e-157 559.3 443 61.6
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 2.5e-155 552.7 445 69.4
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.3e-155 552.4 446 61.2
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.3e-155 552.4 446 61.2
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 5.6e-155 551.6 428 61.9
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 7.3e-155 551.2 428 67.5
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 1.1e-153 547.4 413 69.5
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 3.1e-153 545.8 443 58.7
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.2e-152 543.9 464 66.8
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 9.9e-152 540.8 440 60.9
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.3e-151 540.4 436 66.7
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 4.9e-151 538.5 422 60.9
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 3.2e-150 535.8 451 59.0
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 2.1e-149 533.1 428 60.0
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 2.7e-149 532.7 430 61.6
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 6.0e-149 531.6 403 69.0
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 7.8e-149 531.2 443 58.9
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 7.8e-149 531.2 424 60.6
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 1.7e-148 530.0 443 59.1
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.5e-147 526.9 446 59.0
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 3.6e-146 522.3 443 63.0
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.4e-144 515.8 446 57.8
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 5.8e-144 515.0 453 57.0
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 7.6e-144 514.6 443 64.8
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 1.3e-143 513.8 444 60.8
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.3e-143 513.8 425 66.4
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 1.4e-142 510.4 428 63.8
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.9e-142 510.0 438 62.6
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 2.7e-141 506.1 507 52.5
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 4.6e-141 505.4 443 63.9
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 8.7e-140 501.1 424 59.9
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.1e-139 500.7 444 61.0
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 1.9e-139 500.0 446 61.9
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 6.2e-138 495.0 449 55.7
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.5e-136 490.3 415 62.4
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.0e-136 490.0 444 61.5
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 3.4e-136 489.2 328 73.2
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 1.3e-135 487.3 449 55.5
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 6.0e-133 478.4 417 59.0
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 4.3e-131 472.2 441 60.1
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 6.2e-130 468.4 443 58.5
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 4.0e-129 465.7 443 58.2
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 6.9e-129 464.9 446 58.3
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.0e-128 463.4 353 65.7
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 5.8e-128 461.8 449 58.6
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 3.2e-126 456.1 441 57.4
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 4.2e-126 455.7 446 58.7
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 1.6e-125 453.8 414 60.4
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 3.5e-125 452.6 427 53.9
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.6e-125 452.2 355 62.3
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 6.0e-125 451.8 450 51.8
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.3e-124 450.7 438 52.1
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.8e-124 450.3 446 57.4
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 8.7e-124 448.0 373 64.6
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.3e-123 446.0 446 57.0
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.6e-120 436.4 375 62.7
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 4.5e-120 435.6 443 52.4
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.7e-119 433.7 408 58.1
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 2.9e-119 433.0 426 56.8
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 3.8e-119 432.6 421 56.3
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 5.5e-118 428.7 447 54.1
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 7.1e-118 428.3 447 52.8
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 4.6e-117 425.6 447 52.3
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 4.6e-117 425.6 447 53.0
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 1.9e-115 420.2 415 57.1
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 9.6e-115 417.9 417 53.2
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 2.4e-113 413.3 440 50.9
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 2.4e-113 413.3 444 50.9
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 2.4e-113 413.3 444 50.9
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 5.3e-113 412.1 444 51.1
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 5.8e-112 408.7 444 51.6
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 3.8e-111 406.0 430 54.2
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 9.0e-105 384.8 423 52.2
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 4.5e-104 382.5 443 51.0
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 7.2e-102 375.2 335 56.7
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 2.1e-101 373.6 282 62.4
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 2.7e-101 373.2 322 60.6
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 9.4e-94 348.2 248 64.9
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 6.1e-93 345.5 447 45.9
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.0e-91 340.5 314 64.0
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 7.4e-83 312.0 326 50.6
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 3.7e-82 309.7 334 54.8
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 9.1e-81 305.1 278 52.9
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 1.9e-78 297.4 262 67.9
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 3.0e-76 290.0 252 61.9
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 2.1e-61 240.7 405 40.2
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 2.0e-59 234.2 406 38.7
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.0e-55 221.9 406 36.2
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 1.8e-52 211.1 394 35.5
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 5.8e-51 206.1 406 35.0
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 9.8e-51 205.3 160 58.1
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 8.3e-50 202.2 394 34.3
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.4e-49 200.7 211 62.1
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 7.8e-48 195.7 205 53.7
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 1.5e-46 191.4 406 35.7
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.1e-44 185.3 218 42.2
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 8.6e-39 165.6 101 73.3
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 9.5e-38 162.2 148 54.7
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 6.8e-36 156.0 226 41.2
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 8.9e-36 155.6 147 53.1
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.7e-34 151.4 112 58.9
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 7.1e-33 146.0 113 55.8
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 6.0e-32 142.9 110 64.5
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 6.4e-26 122.9 105 52.4
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.6e-24 118.2 193 38.3
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 1.0e-23 115.5 131 45.8
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-22 112.1 79 67.1
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 2.5e-22 110.9 109 52.3
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 8.7e-15 85.9 63 60.3
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.9e-14 84.7 57 70.2
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 2.4e-12 77.8 54 70.4
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-11 75.5 66 53.0
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 2.0e-11 74.7 65 52.3
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 3.2e-09 67.4 38 78.9
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 7.1e-09 66.2 38 78.9
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 2.1e-08 64.7 38 76.3
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 6.0e-08 63.2 57 54.4
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 7.9e-08 62.8 40 75.0
Lj2P868T14 Lonicera japonica HOM05D003039 ORTHO05D009478 1.3e-07 62.0 133 33.1
Lsat_1_v5_gn_1_127740 Lactuca sativa HOM05D001044 ORTHO05D008486 1.5e-06 58.5 39 71.8
Lj2P848T5 Lonicera japonica HOM05D003039 ORTHO05D009478 2.5e-06 57.8 126 34.1
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 5.6e-06 56.6 97 28.9
MBI10_g15884_MAGBIO Magnolia biondii HOM05D045841 ORTHO05D006945 9.6e-06 55.8 67 52.2


User provided reference genes

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