Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1466.8 739 100.0
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1421.0 739 96.3
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1359.4 742 92.0
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1271.5 750 85.6
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1264.2 749 85.6
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1261.1 761 84.4
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 0.0e+00 1241.5 746 84.3
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1238.4 732 83.7
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 0.0e+00 1226.1 726 84.7
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 0.0e+00 1204.9 733 82.3
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1173.3 776 77.1
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1161.0 761 77.5
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1159.1 771 76.4
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1151.3 764 75.8
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1148.7 761 76.1
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1147.1 775 75.7
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1145.6 763 75.8
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1142.9 759 77.1
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1138.6 764 76.6
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1138.3 766 75.1
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1134.4 769 75.6
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1132.1 763 75.2
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 0.0e+00 1124.8 770 74.3
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1122.8 763 75.2
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1115.9 774 72.7
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1113.6 774 72.6
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1112.8 752 74.5
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1110.5 764 74.6
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1109.4 768 74.9
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1103.2 763 72.9
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1102.0 760 74.7
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1094.7 782 71.9
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1094.0 766 73.2
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 0.0e+00 1092.8 760 73.2
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1087.8 765 73.9
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1087.0 755 72.3
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1086.6 762 72.8
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 0.0e+00 1084.7 763 72.9
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 0.0e+00 1083.9 757 72.9
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1083.9 762 72.7
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1083.2 774 71.4
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 0.0e+00 1078.9 761 72.1
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1077.8 786 72.1
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 6.5e-310 1067.0 768 71.6
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 5.5e-309 1063.9 772 70.7
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 7.2e-309 1063.5 758 70.6
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.2e-308 1062.8 768 71.2
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 3.6e-308 1061.2 755 69.9
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.0e-307 1057.7 813 69.4
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 2.4e-304 1048.5 776 71.3
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 9.1e-304 1046.6 776 71.1
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 2.7e-303 1045.0 760 70.5
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.2e-300 1036.2 760 70.8
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 2.3e-299 1031.9 768 69.0
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 6.8e-299 1030.4 752 69.5
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 6.3e-297 1023.8 761 68.7
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 1.4e-296 1022.7 770 69.2
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 2.4e-296 1021.9 768 68.5
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 3.5e-295 1018.1 761 68.6
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.0e-294 1016.5 761 68.3
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 9.5e-293 1010.0 761 68.1
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 2.1e-292 1008.8 768 68.1
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 6.1e-292 1007.3 763 67.0
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 6.1e-292 1007.3 763 67.0
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 3.0e-291 1005.0 763 67.1
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.8e-289 998.4 767 67.8
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 1.6e-287 992.6 783 67.4
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 2.0e-287 992.3 787 65.1
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 3.5e-287 991.5 761 67.3
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 8.6e-286 986.9 758 67.9
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 3.1e-283 978.4 760 66.6
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.0e-282 975.7 761 65.8
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.6e-282 975.3 758 68.2
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 5.8e-282 974.2 927 58.6
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 2.2e-281 972.2 764 66.2
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 1.9e-280 969.1 749 66.2
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 2.4e-280 968.8 763 65.7
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 1.2e-279 966.5 736 66.3
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 1.7e-278 962.6 774 66.1
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 2.3e-275 952.2 520 88.1
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 4.0e-275 951.4 516 88.8
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.1e-269 933.3 678 71.8
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 9.5e-269 930.2 758 63.1
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 4.7e-268 927.9 733 67.4
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 8.1e-268 927.2 737 66.4
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 7.5e-266 920.6 736 65.8
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 1.9e-264 916.0 762 63.0
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 4.6e-263 911.4 510 85.7
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.1e-259 900.2 644 73.9
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 8.7e-254 880.6 768 60.8
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 2.9e-249 865.5 685 65.0
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.2e-248 861.7 750 61.2
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.0e-246 857.1 757 59.8
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.1e-239 832.8 758 59.9
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 7.9e-231 804.3 809 51.9
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 5.1e-230 801.6 621 65.4
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.9e-229 799.7 762 56.4
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 5.9e-218 761.5 837 50.4
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 2.0e-210 736.5 755 51.0
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 3.4e-210 735.7 754 53.3
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.3e-201 707.2 752 51.3
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.3e-201 707.2 639 56.7
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.1e-199 699.9 641 55.9
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.7e-199 699.5 637 56.2
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.6e-194 683.7 753 52.5
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 8.8e-190 667.9 730 50.0
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 2.6e-189 666.4 665 51.3
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 3.3e-176 622.9 334 87.1
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 7.8e-154 548.5 464 66.2
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.2e-130 471.5 409 59.4
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 7.4e-120 435.6 447 55.3
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.6e-103 381.3 217 81.1
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.1e-99 368.6 238 75.6
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 3.8e-92 343.6 573 34.4
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 3.2e-91 340.5 497 37.6
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 6.1e-90 336.3 182 87.9
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 4.0e-81 307.0 662 32.2
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 3.6e-74 283.9 283 58.0
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 5.2e-73 280.0 206 75.2
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 2.9e-68 264.2 374 47.3
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 1.8e-62 245.0 247 59.5
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 1.8e-62 245.0 247 59.5
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.6e-58 230.7 135 79.3
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.3e-52 212.2 168 62.5
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.6e-50 205.3 132 77.3
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 8.9e-49 199.5 107 86.9
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.1e-46 192.6 140 69.3
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 6.4e-39 166.8 165 61.8
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.1e-37 161.8 175 56.0
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.3e-28 132.5 148 48.6
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 6.6e-28 130.2 96 68.8
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.3e-18 99.4 66 74.2
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.1e-17 96.3 55 74.5
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 3.1e-17 94.7 140 47.1
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 9.9e-16 89.7 62 64.5
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 1.9e-14 85.5 148 39.9
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 1.8e-09 68.9 535 20.6
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 3.1e-09 68.2 59 54.2
ClCG04G004810 Citrullus lanatus HOM05D004811 ORTHO05D044609 3.4e-08 64.7 97 39.2
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.3e-07 62.8 108 36.1
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 4.9e-07 60.8 112 35.7
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 4.9e-07 60.8 107 36.4
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 4.9e-07 60.8 107 36.4
Sed0000937 Sechium edule HOM05D004811 ORTHO05D044609 6.4e-07 60.5 39 69.2
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 3.2e-06 58.2 79 41.8
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 4.2e-06 57.8 369 20.1
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 7.1e-06 57.0 88 40.9


User provided reference genes

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