Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.6e-137 492.7 237 100.0
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 3.7e-113 411.8 238 81.9
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 2.3e-107 392.5 237 78.1
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.2e-97 359.4 233 72.5
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.0e-83 313.9 239 62.3
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 3.0e-83 312.4 240 62.1
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.0e-82 309.7 240 61.7
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 4.4e-82 308.5 241 61.8
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.4e-80 303.5 240 58.3
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 2.0e-79 299.7 237 58.2
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.1e-72 277.3 246 56.1
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 3.1e-72 275.8 234 59.0
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 5.3e-72 275.0 233 54.5
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 9.4e-69 264.2 206 60.2
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 4.1e-56 222.2 174 61.5
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 9.8e-50 201.1 220 44.5
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 3.7e-49 199.1 219 45.2
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.4e-48 197.2 221 45.2
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.4e-48 196.4 199 48.2
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.2e-47 194.1 234 43.6
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.2e-47 194.1 213 44.6
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 4.5e-47 192.2 248 39.9
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 4.5e-47 192.2 201 47.8
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 5.9e-47 191.8 246 39.0
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 5.9e-47 191.8 204 45.1
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.7e-46 190.3 225 42.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.7e-46 190.3 225 42.2
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 3.9e-46 189.1 250 40.4
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.5e-45 187.2 202 46.0
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.9e-45 186.8 224 43.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.9e-45 186.8 199 44.2
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.3e-45 185.7 210 43.8
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 5.6e-45 185.3 201 43.3
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.6e-44 183.7 199 43.2
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.8e-44 183.0 224 40.6
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.8e-44 183.0 224 40.6
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.7e-44 182.2 220 43.2
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.7e-44 182.2 220 43.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 6.1e-44 181.8 198 41.9
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 8.0e-44 181.4 197 44.7
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.0e-43 181.0 203 41.9
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.4e-43 180.6 205 42.9
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.3e-43 179.9 204 43.1
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 4.0e-43 179.1 223 39.0
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 6.8e-43 178.3 199 42.2
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-42 177.6 199 42.2
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.5e-42 177.2 208 40.4
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.0e-42 176.8 199 42.2
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.0e-42 176.8 199 42.2
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.0e-42 176.8 197 45.7
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.6e-42 176.4 197 43.1
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.6e-42 176.4 199 42.2
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 4.4e-42 175.6 199 41.2
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.4e-42 175.6 243 37.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 5.8e-42 175.3 199 42.2
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.8e-42 175.3 197 43.1
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 9.8e-42 174.5 225 40.0
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 9.8e-42 174.5 194 43.3
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.3e-41 174.1 199 41.2
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 4.9e-41 172.2 198 41.9
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 6.4e-41 171.8 203 41.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-40 171.0 195 42.1
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.4e-40 170.6 203 40.9
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.4e-40 170.6 201 42.3
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 3.2e-40 169.5 197 42.6
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 3.2e-40 169.5 169 48.5
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 3.2e-40 169.5 201 42.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 4.1e-40 169.1 195 41.5
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 4.1e-40 169.1 195 41.5
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.1e-40 169.1 197 41.6
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 4.1e-40 169.1 204 39.2
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.4e-40 168.7 199 42.7
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 9.2e-40 167.9 223 38.6
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.2e-39 167.5 227 39.6
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-39 167.2 211 36.0
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.7e-39 166.4 210 39.5
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.5e-39 166.0 201 39.3
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 3.5e-39 166.0 226 36.7
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.0e-38 164.5 195 42.6
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.0e-38 164.5 203 39.4
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 3.9e-38 162.5 235 36.6
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 5.0e-38 162.2 195 40.5
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.0e-38 162.2 226 36.7
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 6.6e-38 161.8 202 36.6
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 6.6e-38 161.8 193 43.0
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 8.6e-38 161.4 164 45.7
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 8.6e-38 161.4 195 40.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 8.6e-38 161.4 176 43.2
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.1e-37 161.0 195 40.0
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.1e-37 161.0 230 37.8
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-37 160.6 195 40.0
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.5e-37 160.6 195 40.0
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.9e-37 160.2 197 39.6
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 5.6e-37 158.7 200 40.0
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.6e-37 158.7 219 39.7
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.2e-36 157.5 208 38.0
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.6e-36 157.1 195 40.0
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.1e-36 156.8 195 40.0
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.8e-36 156.4 192 39.1
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.7e-36 155.6 161 48.4
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 8.0e-36 154.8 199 38.2
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.1e-35 154.5 202 38.1
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.4e-35 154.1 193 38.3
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.3e-35 153.3 193 38.9
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.3e-35 153.3 220 39.5
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.1e-35 152.9 203 38.9
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.8e-35 151.8 239 37.7
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 6.8e-35 151.8 196 39.3
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 8.9e-35 151.4 198 38.9
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 8.9e-35 151.4 188 38.3
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 2.0e-34 150.2 223 38.1
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.0e-34 150.2 183 38.3
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 3.4e-34 149.4 208 36.1
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.4e-34 149.1 188 38.3
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 7.5e-34 148.3 183 38.3
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 1.3e-33 147.5 229 38.0
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.2e-33 146.7 241 34.9
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.7e-33 146.0 188 36.2
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 8.3e-33 144.8 166 44.6
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.9e-32 143.7 192 37.0
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 7.1e-32 141.7 151 47.7
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 9.2e-32 141.4 148 43.2
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.2e-31 141.0 245 31.4
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-31 140.6 197 39.6
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-31 140.2 147 42.9
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.7e-31 139.8 148 42.6
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.5e-31 139.4 205 35.1
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.3e-30 137.5 207 34.3
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-29 134.0 141 44.0
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.9e-29 133.7 147 41.5
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.9e-29 133.7 210 33.3
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.3e-29 132.9 207 34.3
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 9.5e-29 131.3 200 34.0
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 9.5e-29 131.3 177 39.5
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.2e-28 131.0 201 32.3
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.1e-27 127.9 206 35.0
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 3.1e-27 126.3 141 39.7
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 8.9e-27 124.8 118 49.2
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 9.9e-26 121.3 206 34.5
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 1.3e-25 120.9 111 43.2
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 2.2e-25 120.2 195 32.3
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 8.3e-25 118.2 199 33.2
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 7.8e-23 111.7 204 30.4
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 2.3e-22 110.2 123 43.9
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.1e-19 101.3 166 32.5
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.9e-17 93.2 211 25.1
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 2.4e-16 90.1 199 29.1
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 4.2e-16 89.4 194 29.9
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.2e-15 87.8 170 31.2
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.0e-14 83.2 128 36.7
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.9e-14 82.8 128 36.7
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 5.1e-14 82.4 254 26.8
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 3.3e-13 79.7 87 40.2
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 6.9e-11 72.0 175 27.4
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 2.4e-08 63.5 48 56.2
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 6.6e-06 55.5 82 31.7


User provided reference genes

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