Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 0.0e+00 1761.9 923 100.0
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 0.0e+00 1612.8 924 91.5
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 0.0e+00 1534.6 929 87.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 0.0e+00 1529.2 925 88.0
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 0.0e+00 1297.3 923 74.4
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 0.0e+00 1277.7 927 73.4
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 0.0e+00 1261.5 936 73.5
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 0.0e+00 1257.3 927 72.7
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 0.0e+00 1174.5 931 69.9
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 0.0e+00 1174.5 996 66.5
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.0e-283 978.0 650 79.4
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.0e-280 968.8 951 59.1
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 6.1e-265 917.9 954 58.0
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.4e-264 916.8 1005 54.0
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.1e-261 905.2 951 57.3
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.1e-258 897.1 951 56.5
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.5e-258 896.7 957 54.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 3.2e-258 895.6 951 55.2
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 5.5e-258 894.8 890 57.1
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 4.4e-255 885.2 956 53.5
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 9.8e-255 884.0 953 55.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 6.3e-254 881.3 956 55.1
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 4.3e-250 868.6 950 55.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.5e-250 867.5 948 55.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.1e-249 866.3 948 55.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 8.9e-248 860.9 955 54.6
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-246 856.7 952 54.2
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 3.7e-246 855.5 956 54.9
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.7e-246 855.5 947 53.5
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.1e-245 854.0 941 54.1
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.4e-245 853.6 941 54.2
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.8e-245 853.2 943 53.7
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.5e-244 849.0 943 53.9
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.3e-243 847.0 944 54.2
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.7e-243 846.7 941 53.7
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.1e-242 844.0 960 52.2
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.9e-242 843.2 940 55.2
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.5e-242 842.8 949 53.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 7.5e-239 831.2 954 52.8
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.7e-238 830.1 1007 51.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.2e-238 829.7 950 53.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.4e-237 827.0 947 52.3
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.4e-237 825.1 960 52.4
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.6e-236 822.0 959 51.7
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.3e-235 820.5 927 53.0
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 9.5e-234 814.3 945 54.2
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-230 803.9 956 52.1
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 4.3e-226 788.9 950 50.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.0e-216 755.7 854 52.6
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.2e-216 755.4 913 50.7
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.4e-214 748.4 930 50.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-213 747.3 854 52.0
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 7.1e-213 745.0 649 63.8
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 4.6e-212 742.3 923 50.1
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-210 737.6 890 52.7
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.3e-209 734.2 944 50.0
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.8e-208 730.3 921 49.2
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.6e-207 726.5 887 50.3
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.9e-206 723.0 959 48.3
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 9.3e-205 718.0 916 49.7
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 4.6e-204 715.7 979 47.3
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 5.1e-203 712.2 921 48.6
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 3.1e-200 703.0 952 48.3
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 4.0e-200 702.6 896 46.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.9e-198 695.7 896 47.9
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 8.4e-198 694.9 943 48.0
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.4e-197 694.1 878 48.9
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 3.2e-197 693.0 889 49.5
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.2e-197 693.0 974 47.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.6e-196 689.1 944 47.1
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.0e-195 688.0 894 47.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.5e-194 683.3 794 52.5
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.3e-194 682.9 890 48.0
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 9.6e-194 681.4 944 47.0
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 8.2e-193 678.3 918 47.5
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.1e-192 677.9 902 47.9
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.4e-192 676.8 927 48.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-189 667.9 852 47.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.3e-187 661.0 875 47.9
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.3e-187 661.0 852 47.2
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 4.3e-186 656.0 937 44.7
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 4.3e-186 656.0 917 46.7
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.9e-184 648.7 939 46.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.7e-182 644.0 948 44.2
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 5.0e-182 642.5 917 45.9
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.4e-181 641.0 924 45.7
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 9.3e-181 638.3 968 44.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.6e-180 637.5 887 47.9
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 7.9e-180 635.2 920 45.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 3.7e-177 626.3 937 44.5
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 6.3e-177 625.5 593 59.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.8e-176 624.0 886 46.6
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.6e-175 620.2 926 46.8
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.4e-173 614.4 888 45.9
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.5e-173 612.5 948 43.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.2e-172 611.3 926 44.4
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 2.8e-169 600.1 888 45.9
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.1e-168 598.2 897 43.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-168 597.8 941 44.0
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 9.1e-168 595.1 904 44.2
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.3e-166 591.3 957 42.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 5.5e-165 585.9 888 43.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 7.9e-164 582.0 863 45.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.0e-163 581.6 871 44.8
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.0e-163 581.6 859 46.3
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 7.4e-162 575.5 947 42.8
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.2e-161 573.9 940 43.3
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 3.1e-160 570.1 928 42.1
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 9.1e-160 568.5 938 41.5
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.2e-159 568.2 907 42.7
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-157 561.2 890 42.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 4.7e-156 556.2 954 41.1
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.2e-151 541.6 935 41.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-151 541.6 954 43.1
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.9e-151 539.3 953 42.4
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 8.5e-150 535.4 902 42.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.0e-147 528.5 961 42.5
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.0e-147 528.5 961 42.5
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.0e-147 528.5 917 42.0
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 5.2e-147 526.2 969 41.4
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.3e-142 510.8 678 48.8
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.0e-142 509.6 508 57.9
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 9.5e-141 505.4 919 41.1
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.6e-140 504.6 851 40.8
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 6.1e-140 502.7 965 40.8
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.8e-139 501.1 967 40.6
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 7.5e-138 495.7 973 40.3
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.2e-137 494.2 972 39.9
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 3.1e-136 490.3 973 40.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 5.4e-136 489.6 955 40.0
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 3.5e-135 486.9 899 40.5
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.6e-132 476.9 693 44.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.4e-131 474.9 912 40.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.5e-130 471.5 860 40.8
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.5e-130 469.2 705 44.1
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 9.5e-125 452.2 630 47.6
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.6e-122 444.1 830 39.4
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 9.5e-117 425.6 475 53.5
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.1e-116 424.5 997 35.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.1e-115 420.6 821 40.0
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 4.1e-112 410.2 374 61.5
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 3.9e-110 403.7 867 37.0
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.5e-109 399.1 839 37.1
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-107 394.8 438 53.2
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 9.2e-104 382.5 625 43.8
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.3e-101 372.9 882 33.2
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 4.2e-96 357.1 581 42.9
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.6e-93 345.9 265 71.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.8e-92 344.4 912 32.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-82 312.0 339 54.9
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.5e-82 312.0 1063 32.9
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 8.7e-78 296.2 287 56.8
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.3e-76 292.4 447 48.8
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.3e-73 282.3 896 30.6
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.8e-73 280.8 854 31.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.3e-69 267.7 912 31.8
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.6e-63 247.3 383 43.6
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.0e-62 246.1 279 51.3
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.4e-59 235.0 730 33.2
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.3e-57 229.2 282 49.3
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 3.1e-51 208.0 224 53.6
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.8e-49 201.1 287 44.6
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.5e-48 197.2 152 69.7
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.3e-44 186.0 346 40.8
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.1e-43 183.0 497 34.4
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 7.0e-43 180.3 111 75.7
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 5.0e-41 174.1 490 29.6
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 6.5e-41 173.7 169 58.6
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.4e-37 161.0 254 47.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.5e-34 151.4 113 73.5
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 7.7e-34 150.2 132 57.6
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.5e-32 144.1 193 49.7
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 6.3e-20 104.0 85 63.5
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 8.3e-20 103.6 110 46.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.5e-16 92.0 111 42.3
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 9.5e-16 90.1 90 63.3
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-14 86.3 87 51.7
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.3e-12 77.0 48 70.8
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 5.4e-11 74.3 155 32.9
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.3e-09 69.7 91 40.7
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 4.3e-08 64.7 48 52.1
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 4.7e-07 61.2 126 37.3


User provided reference genes

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