Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 5.3e-134 481.1 256 100.0
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 2.2e-100 369.4 266 76.3
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.6e-93 346.7 263 76.0
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 1.8e-86 323.2 244 71.3
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 7.3e-83 311.2 261 68.2
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 3.0e-81 305.8 251 67.3
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 8.9e-81 304.3 263 67.7
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.3e-79 300.4 265 64.9
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.3e-79 300.4 270 64.1
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 7.0e-78 294.7 253 67.6
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 6.6e-76 288.1 206 72.3
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 8.0e-74 281.2 250 64.4
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 8.0e-74 281.2 206 72.8
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 2.0e-72 276.6 228 67.1
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 2.6e-72 276.2 209 71.3
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 2.2e-71 273.1 231 67.1
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 2.9e-71 272.7 200 73.5
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 2.4e-70 269.6 223 65.5
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 5.4e-70 268.5 185 76.2
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 9.2e-70 267.7 221 62.9
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 4.6e-69 265.4 253 60.5
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 6.0e-69 265.0 212 68.4
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.7e-68 263.5 208 70.2
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 3.0e-68 262.7 206 67.5
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 3.9e-68 262.3 177 78.0
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 3.9e-68 262.3 176 77.3
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 5.1e-68 261.9 204 69.1
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 6.6e-68 261.5 179 74.3
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.5e-67 260.4 207 66.7
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 2.5e-67 259.6 262 58.8
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 3.3e-67 259.2 190 70.0
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 7.3e-67 258.1 184 73.9
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.2e-66 257.3 224 62.9
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 2.8e-66 256.1 183 72.1
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 3.6e-66 255.8 250 60.4
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 4.7e-66 255.4 235 60.9
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 4.7e-66 255.4 182 74.2
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.4e-65 253.8 225 63.6
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 1.4e-65 253.8 225 63.6
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.4e-65 253.8 262 56.9
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.4e-65 253.8 212 67.5
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.4e-65 253.8 225 64.9
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.4e-65 253.8 206 64.6
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.3e-65 253.1 225 63.6
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 3.1e-65 252.7 207 69.1
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 5.2e-65 251.9 213 65.7
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 5.8e-64 248.4 188 70.2
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.3e-63 247.3 186 71.0
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.3e-63 247.3 225 63.6
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.7e-63 246.9 186 71.0
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.7e-63 246.9 186 71.0
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.7e-63 246.9 186 71.0
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 2.2e-63 246.5 183 70.5
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.9e-63 246.1 185 70.8
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 3.7e-63 245.7 186 69.4
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 3.7e-63 245.7 241 59.8
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 4.9e-63 245.4 206 64.1
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 8.3e-63 244.6 182 71.4
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.1e-62 244.2 212 65.1
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 1.4e-62 243.8 187 68.4
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.4e-62 243.8 185 70.3
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.9e-62 243.4 281 54.8
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.9e-62 243.4 182 70.9
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 7.1e-62 241.5 183 68.9
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 4.6e-61 238.8 246 59.3
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 4.6e-61 238.8 224 58.9
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 4.6e-61 238.8 224 58.9
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 3.0e-60 236.1 206 64.1
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.5e-59 233.0 182 68.7
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 6.2e-58 228.4 168 69.0
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 6.2e-58 228.4 167 69.5
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.1e-57 227.6 172 69.2
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.8e-57 226.9 208 59.6
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.8e-57 226.9 171 69.6
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.0e-57 225.7 171 69.0
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 9.9e-56 221.1 152 75.7
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 1.4e-54 217.2 161 70.8
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 9.2e-54 214.5 156 70.5
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 9.2e-54 214.5 192 61.5
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 4.6e-53 212.2 198 58.6
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.7e-52 210.3 147 72.8
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 4.3e-51 205.7 203 56.2
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 3.6e-50 202.6 148 72.3
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 4.0e-49 199.1 177 58.8
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.5e-48 197.2 148 69.6
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 2.4e-46 189.9 211 53.6
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 9.3e-46 188.0 183 60.7
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 2.1e-45 186.8 206 55.3
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.0e-44 184.5 256 44.5
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 2.5e-43 179.9 133 68.4
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 4.8e-42 175.6 195 53.3
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.4e-41 174.1 203 52.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.2e-40 171.0 228 49.1
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.5e-40 170.6 176 55.7
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 2.6e-40 169.9 123 74.8
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 9.9e-40 167.9 214 50.0
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 2.2e-39 166.8 124 72.6
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.0e-36 157.9 214 46.3
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.1e-34 150.2 168 52.4
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 2.9e-31 139.8 152 50.7
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 7.9e-29 131.7 84 81.0
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.5e-27 127.5 104 63.5
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 3.3e-27 126.3 145 53.1
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 3.7e-26 122.9 146 54.1
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 2.4e-25 120.2 126 55.6
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 3.4e-24 116.3 135 54.1
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 7.6e-24 115.2 146 53.4
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 2.9e-23 113.2 185 43.8
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 1.9e-22 110.5 66 81.8
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.6e-21 107.5 97 61.9
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 6.0e-21 105.5 83 63.9
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 6.0e-21 105.5 131 49.6
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.0e-20 103.2 86 68.6
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 4.3e-19 99.4 129 52.7
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 7.4e-19 98.6 240 34.2
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 2.9e-15 86.7 73 72.6
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 2.9e-15 86.7 65 70.8
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 4.3e-11 72.8 104 44.2
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.7e-10 70.9 63 58.7
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.4e-08 63.2 42 71.4
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.0e-07 61.6 47 59.6
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 1.1e-06 58.2 52 55.8
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 2.5e-06 57.0 50 58.0
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 3.2e-06 56.6 80 41.2


User provided reference genes

Program Settings