Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 0.0e+00 1098.2 546 100.0
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 4.3e-266 921.0 541 83.4
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 2.1e-233 812.4 541 74.9
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 1.9e-218 762.7 544 70.8
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 4.8e-217 758.1 540 71.9
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 3.8e-214 748.4 597 64.8
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 1.1e-205 720.3 412 86.2
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 7.9e-204 714.1 541 68.0
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 1.6e-180 636.7 570 59.8
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.6e-164 583.6 545 54.9
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 6.1e-164 581.6 550 54.9
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 1.0e-163 580.9 570 56.3
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 1.3e-161 573.9 545 54.5
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 6.4e-161 571.6 563 53.3
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 4.7e-148 528.9 538 52.0
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 1.8e-147 526.9 533 52.3
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 1.4e-144 517.3 544 49.8
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 3.2e-144 516.2 551 49.5
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 6.0e-143 511.9 536 50.7
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 4.7e-140 502.3 528 49.6
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 8.9e-139 498.0 537 49.9
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 3.4e-138 496.1 512 50.2
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 7.1e-136 488.4 543 47.5
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 9.2e-136 488.0 551 47.7
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 3.5e-135 486.1 542 47.6
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 4.6e-135 485.7 515 50.1
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.0e-134 484.6 544 47.2
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 8.6e-134 481.5 534 48.9
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 8.6e-134 481.5 529 47.8
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 1.9e-133 480.3 530 48.9
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 2.5e-133 479.9 534 46.4
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 1.6e-132 477.2 540 48.1
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 3.6e-132 476.1 493 50.5
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.8e-131 473.8 542 46.9
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 1.8e-131 473.8 530 46.4
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 3.4e-130 469.5 553 45.8
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 1.4e-128 464.2 542 47.2
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 7.1e-128 461.8 594 44.6
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 2.3e-126 456.8 545 45.3
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 8.7e-126 454.9 482 50.2
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 3.3e-125 453.0 554 46.8
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 5.6e-125 452.2 421 54.4
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 1.3e-124 451.1 545 46.1
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 1.6e-124 450.7 546 44.3
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.6e-124 450.7 524 45.8
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 2.8e-124 449.9 571 44.1
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 8.1e-124 448.4 542 45.2
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 1.4e-123 447.6 546 45.2
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 2.6e-122 443.4 538 46.3
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 4.5e-122 442.6 557 45.1
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 5.8e-122 442.2 614 42.3
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 9.9e-122 441.4 545 44.2
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 6.4e-121 438.7 489 47.9
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.9e-120 437.2 549 45.4
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 3.2e-120 436.4 471 46.9
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 3.5e-119 433.0 550 44.5
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 4.6e-119 432.6 540 45.2
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 6.0e-119 432.2 543 44.8
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 2.3e-118 430.3 550 44.7
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 8.7e-118 428.3 550 44.5
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 1.9e-117 427.2 550 44.7
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 1.9e-117 427.2 560 43.8
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.3e-116 424.5 493 46.5
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 1.1e-115 421.4 419 50.8
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 1.8e-115 420.6 518 45.4
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 5.3e-115 419.1 565 43.9
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 2.6e-114 416.8 394 54.1
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 4.9e-113 412.5 699 36.6
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 5.5e-112 409.1 426 49.5
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 7.9e-111 405.2 537 43.8
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 2.4e-107 393.7 477 44.9
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 1.3e-105 387.9 396 51.0
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 2.5e-104 383.6 537 38.7
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 2.1e-103 380.6 477 43.4
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 3.5e-103 379.8 425 46.6
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 7.9e-103 378.6 430 46.5
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 5.1e-102 375.9 440 47.5
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 3.3e-101 373.2 533 42.8
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 2.2e-100 370.5 543 40.5
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 6.3e-100 369.0 423 44.9
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 3.4e-98 363.2 493 43.0
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 3.2e-96 356.7 356 50.0
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 2.7e-95 353.6 234 75.2
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 1.5e-93 347.8 383 47.0
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 1.5e-93 347.8 389 47.8
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 3.3e-93 346.7 428 44.2
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 1.3e-92 344.7 406 44.1
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.1e-91 341.7 393 46.1
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 7.7e-90 335.5 390 46.9
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 4.2e-88 329.7 384 45.8
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 7.2e-88 328.9 385 45.7
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 2.5e-80 303.9 393 43.8
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 2.5e-80 303.9 439 41.0
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 3.2e-72 276.9 286 52.8
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.3e-68 265.0 228 57.5
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 3.0e-62 243.8 280 47.1
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 8.8e-62 242.3 304 44.1
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 7.0e-59 232.6 530 30.2
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 3.0e-54 217.2 527 29.4
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 5.7e-53 213.0 344 35.8
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 8.9e-38 162.5 227 40.1
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 5.4e-35 153.3 155 56.1
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 2.9e-28 131.0 219 33.8
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 7.1e-27 126.3 202 36.1
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 7.8e-26 122.9 210 32.4
Psat6g225040 Pisum sativum HOM05D006967 ORTHO05D008692 9.5e-24 115.9 88 64.8
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 8.9e-22 109.4 118 50.0
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 3.4e-21 107.5 147 42.2
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 4.6e-18 97.1 158 34.2
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.0e-17 95.9 183 35.5
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.1e-15 88.2 113 48.7
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 9.9e-13 79.3 191 28.8
PGSC0003DMG401016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 6.4e-12 76.6 258 29.1
HPP92_007178 Vanilla planifolia HOM05D006967 ORTHO05D008692 5.3e-06 57.0 98 33.7


User provided reference genes

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