Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 4.1e-199 698.0 385 100.0
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.2e-185 653.3 389 94.3
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 3.9e-181 638.3 389 93.1
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 8.7e-181 637.1 389 92.0
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.1e-175 620.2 389 91.5
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.3e-155 553.5 402 81.3
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.7e-155 552.0 402 81.1
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.2e-153 547.0 402 80.8
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 5.9e-153 544.7 403 81.1
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.0e-152 543.9 403 81.1
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.3e-152 543.5 403 80.4
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 5.0e-152 541.6 403 80.9
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 6.5e-152 541.2 403 80.9
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 4.2e-151 538.5 405 80.5
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.2e-150 537.0 403 79.9
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 8.8e-149 530.8 404 77.2
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 4.7e-142 508.4 401 74.8
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 6.1e-142 508.1 421 74.3
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 2.6e-140 502.7 403 75.4
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 3.3e-132 475.7 402 72.1
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.0e-125 452.2 408 68.9
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.1e-122 444.1 326 77.6
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 7.0e-122 441.4 405 68.1
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.2e-121 440.7 408 68.4
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.2e-121 440.7 419 67.8
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 3.8e-120 435.6 422 66.4
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-119 433.7 313 83.4
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.6e-118 430.3 402 67.4
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 3.6e-118 429.1 410 68.5
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 4.7e-118 428.7 408 66.2
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.0e-117 427.6 411 67.6
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.4e-117 427.2 406 66.7
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.4e-117 427.2 409 66.3
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.8e-117 426.8 398 66.6
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 2.3e-117 426.4 404 68.3
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.3e-117 426.4 406 68.2
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.3e-117 426.4 413 65.9
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 2.0e-116 423.3 422 64.7
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.0e-116 423.3 430 62.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.4e-116 422.5 407 68.3
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 8.3e-115 417.9 407 63.4
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.4e-114 416.4 400 67.2
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.4e-114 415.2 400 66.5
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.3e-112 410.6 397 65.2
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.7e-112 410.2 360 70.8
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.7e-112 410.2 399 64.7
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 8.6e-112 407.9 414 64.0
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 2.5e-111 406.4 399 64.9
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 4.3e-111 405.6 408 65.7
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 5.6e-111 405.2 346 73.1
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 7.3e-111 404.8 404 65.3
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 9.5e-111 404.4 422 63.7
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 9.5e-111 404.4 404 65.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 2.1e-110 403.3 406 63.5
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 6.1e-110 401.7 398 64.3
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.0e-109 401.0 405 63.2
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 5.2e-109 398.7 407 65.4
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 6.8e-109 398.3 398 64.3
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 2.0e-108 396.7 415 62.4
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.6e-108 396.4 404 62.4
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.6e-108 396.4 406 63.8
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 3.4e-108 396.0 438 61.2
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 4.4e-108 395.6 410 62.4
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 9.8e-108 394.4 403 64.5
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 9.8e-108 394.4 431 61.3
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 2.2e-107 393.3 403 63.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.9e-107 392.9 402 64.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.7e-107 392.5 401 63.6
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.4e-107 391.7 402 63.2
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 6.4e-107 391.7 405 64.9
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.1e-106 391.0 400 63.2
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 2.4e-106 389.8 423 61.2
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 3.2e-106 389.4 404 61.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.2e-106 389.4 402 62.7
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 5.4e-106 388.7 407 62.2
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 5.4e-106 388.7 418 62.0
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 7.0e-106 388.3 407 63.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.7e-105 386.3 404 63.1
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 2.7e-105 386.3 401 63.1
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 7.8e-105 384.8 408 64.5
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 7.8e-105 384.8 417 61.4
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 2.3e-104 383.3 401 61.3
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 8.6e-104 381.3 407 59.5
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 8.6e-104 381.3 401 62.8
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 4.3e-103 379.0 399 62.4
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 5.6e-103 378.6 407 62.4
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.2e-102 377.5 432 60.4
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.8e-102 376.3 403 62.0
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.0e-102 374.8 404 61.9
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.1e-101 374.4 354 67.2
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 1.1e-101 374.4 354 67.8
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.8e-101 373.6 409 60.1
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.8e-101 373.6 403 61.8
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 5.2e-101 372.1 354 67.5
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.8e-101 371.7 403 61.8
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 4.4e-100 369.0 341 69.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 7.5e-100 368.2 430 58.8
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.7e-99 367.1 431 58.7
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.1e-98 364.4 403 60.3
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.9e-98 363.6 433 58.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.9e-98 363.6 338 65.1
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 3.2e-98 362.8 427 59.3
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.0e-98 361.7 393 60.8
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.2e-97 360.9 425 59.1
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.2e-97 360.9 425 59.1
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.2e-97 360.9 405 60.2
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 3.5e-97 359.4 405 59.5
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 6.0e-97 358.6 435 57.9
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 2.3e-96 356.7 430 56.5
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.1e-95 354.4 328 67.4
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 3.3e-95 352.8 422 58.3
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 5.8e-92 342.0 395 56.7
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-91 340.1 400 59.0
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.1e-90 337.8 401 58.9
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.2e-90 336.3 401 59.4
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.4e-90 335.5 404 57.2
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.6e-89 334.0 399 56.6
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.7e-88 330.5 328 64.9
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.1e-85 321.2 439 52.8
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.4e-82 310.1 346 59.5
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 2.7e-81 306.6 325 62.5
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 4.0e-77 292.7 401 50.4
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.2e-74 283.1 335 57.6
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 7.1e-74 282.0 365 54.8
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 2.8e-70 270.0 419 47.7
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 1.3e-64 251.1 411 46.7
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.9e-64 249.6 385 48.3
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.3e-62 244.6 382 49.2
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.7e-62 243.0 398 50.0
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.2e-58 229.6 399 44.4
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.3e-56 224.6 241 63.1
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.6e-52 210.3 310 49.7
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.4e-50 204.5 206 60.7
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.1e-49 200.7 222 60.8
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 3.9e-48 196.4 281 50.2
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-47 194.9 257 55.3
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.1e-47 194.9 257 55.3
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 5.3e-45 186.0 216 57.9
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.7e-43 181.0 243 50.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 2.9e-43 180.3 268 40.7
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.6e-41 173.3 312 43.3
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.9e-40 169.9 310 43.2
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 9.7e-39 165.2 105 86.7
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.0e-35 155.2 263 38.0
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 8.5e-35 152.1 370 37.6
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.1e-29 135.2 211 47.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 5.3e-29 132.9 103 70.9
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.7e-27 127.9 208 45.2
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.7e-25 119.8 333 41.1
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.8e-21 107.8 150 57.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 3.1e-21 107.1 249 32.5
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.6e-09 67.0 236 25.4
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 2.3e-08 64.3 108 57.4
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 2.8e-06 57.4 113 37.2


User provided reference genes

Program Settings