Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 3667.5 1845 100.0
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 3174.0 1844 86.8
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 2858.6 1841 77.9
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 2794.6 1840 77.3
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 2731.4 1845 75.3
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 2689.8 1896 73.5
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 2536.1 1848 70.9
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 2526.9 1848 70.8
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 2123.2 1442 74.5
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 2118.2 1852 60.1
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 2115.1 2060 55.5
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 2109.3 1848 60.1
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 2102.8 1863 60.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2097.8 1872 59.1
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 2090.8 1849 59.2
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 2086.2 1426 74.4
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2076.6 1854 58.7
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 2065.0 1855 58.1
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 2063.5 1851 59.3
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 2052.7 1842 58.4
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 2027.7 1694 62.6
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 2015.4 1884 57.4
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 2014.2 1849 58.1
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1976.8 1849 57.4
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1965.7 1875 56.3
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1961.0 1867 56.5
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1935.2 1851 56.4
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1934.1 1854 56.4
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1900.9 1858 55.8
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1897.1 1858 55.5
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1883.6 1866 54.3
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1859.3 1827 55.1
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1857.0 1856 54.1
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1848.2 1846 54.3
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1838.2 1845 53.0
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1836.2 1855 53.6
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1817.0 1849 53.1
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1806.6 1855 53.0
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1799.6 1856 51.6
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1793.9 1848 52.8
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1792.3 1860 52.7
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1790.8 1854 52.7
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1789.6 1518 61.5
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1788.5 1853 52.1
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1770.0 1559 59.8
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1765.7 1856 52.3
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1765.0 1857 51.6
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1762.7 1849 51.6
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1762.3 1858 51.8
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1762.3 1853 51.8
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1762.3 1855 52.2
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1761.5 1859 51.6
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1760.3 1755 53.3
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1760.0 1913 50.5
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1759.6 1856 51.6
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1758.8 1827 52.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1755.7 1861 52.2
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1751.1 1879 51.0
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1748.4 1858 51.4
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1748.4 1941 51.3
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1747.6 1845 51.2
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1744.6 1852 51.5
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1741.1 1758 54.6
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1726.1 1865 51.5
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1713.7 1835 50.7
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1712.2 1861 50.6
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1676.8 1861 49.8
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1654.4 1859 49.7
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1652.5 1661 54.5
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 0.0e+00 1626.3 1513 60.5
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1601.3 1770 49.5
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1562.4 1852 48.2
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1557.7 1616 52.1
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1554.7 1543 54.5
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1516.5 1874 46.4
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1431.0 1879 44.4
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1417.5 1153 63.2
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1262.7 920 71.2
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1231.5 1464 48.1
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1208.7 1017 61.9
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1189.1 1067 60.1
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 0.0e+00 1110.5 1944 36.4
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1089.3 1404 44.4
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1077.0 1756 38.9
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 6.4e-306 1055.0 1356 46.1
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 4.0e-300 1035.8 959 56.4
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.8e-290 1002.7 1018 53.6
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 1.1e-270 937.9 1482 40.4
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 5.7e-270 935.6 793 61.0
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 6.1e-256 889.0 804 60.3
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 3.6e-208 730.3 750 55.7
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.2e-206 725.3 517 72.3
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 3.3e-193 680.6 392 88.5
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 9.6e-193 679.1 404 83.9
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 1.2e-192 678.7 407 83.5
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 9.1e-143 513.1 477 59.3
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.8e-136 491.5 407 64.1
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 5.3e-135 487.3 574 48.3
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 2.2e-133 481.9 432 60.9
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 3.2e-132 478.0 288 84.4
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 1.2e-126 459.5 610 43.0
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 7.2e-124 450.3 312 73.1
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.6e-118 432.6 333 67.3
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.2e-116 424.9 643 39.2
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 9.5e-108 396.7 557 42.4
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 5.7e-105 387.5 605 42.1
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.2e-95 355.1 477 41.5
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 3.5e-94 351.7 369 51.8
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.1e-87 330.1 502 40.4
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 7.1e-87 327.4 307 56.4
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.2e-86 326.6 592 35.3
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 9.5e-84 317.0 253 63.2
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 1.4e-74 286.6 347 48.1
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 3.1e-74 285.4 181 78.5
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 7.6e-73 280.8 499 36.9
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.3e-72 280.0 562 33.3
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 2.7e-70 272.3 178 75.3
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 4.6e-70 271.6 386 40.7
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 3.9e-69 268.5 511 34.8
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 6.6e-69 267.7 213 62.0
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.6e-67 263.1 137 92.7
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 6.6e-61 241.1 374 37.4
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 1.8e-58 233.0 142 80.3
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.3e-56 226.9 735 25.9
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 1.9e-55 223.0 177 59.9
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 6.7e-53 214.5 400 36.2
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.5e-52 213.4 108 98.1
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 1.8e-50 206.5 668 26.9
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.6e-49 202.6 296 40.5
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.0e-48 200.7 182 57.7
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 4.6e-46 191.8 825 23.8
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 6.0e-46 191.4 429 32.6
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 5.1e-45 188.3 112 83.0
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 1.6e-43 183.3 148 64.2
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 3.0e-37 162.5 213 41.3
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.9e-36 159.8 154 57.8
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.3e-36 159.1 136 63.2
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 1.0e-32 147.5 85 85.9
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 1.0e-32 147.5 85 87.1
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 5.5e-31 141.7 150 43.3
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 4.6e-30 138.7 140 52.9
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 4.3e-28 132.1 74 89.2
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 5.7e-28 131.7 130 54.6
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.3e-27 130.6 186 42.5
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.7e-27 130.2 82 78.0
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 3.1e-26 125.9 82 75.6
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.1e-26 125.6 82 75.6
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.7e-22 112.1 83 66.3
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.6e-20 106.3 128 47.7
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.3e-20 105.9 55 92.7
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 2.8e-19 102.8 70 77.1
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 5.3e-18 98.6 70 75.7
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 4.5e-17 95.5 64 78.1
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 2.2e-16 93.2 157 36.3
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 3.8e-16 92.4 170 34.1
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 1.9e-15 90.1 49 91.8
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 1.9e-15 90.1 49 91.8
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 1.9e-15 90.1 49 91.8
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 2.1e-14 86.7 48 89.6
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.8e-13 83.6 56 73.2
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 6.7e-13 81.6 118 42.4
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 6.7e-13 81.6 118 42.4
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 3.7e-11 75.9 108 42.6
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 1.8e-10 73.6 83 47.0
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 2.4e-10 73.2 56 66.1
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 1.6e-09 70.5 61 54.1
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 2.2e-08 66.6 75 42.7
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.1e-07 64.3 197 26.9
Psat1g032760 Pisum sativum HOM05D003893 ORTHO05D005167 1.1e-07 64.3 52 65.4
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 1.5e-07 63.9 180 30.0
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 3.2e-07 62.8 184 29.3
arahy.Tifrunner.gnm1.ann1.3X15P1 Arachis hypogaea HOM05D000826 ORTHO05D006448 5.5e-07 62.0 35 82.9
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 1.2e-06 60.8 139 33.1
BcaNung07323 Brassica carinata HOM05D003893 ORTHO05D005167 2.1e-06 60.1 46 65.2
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 8.0e-06 58.2 80 46.2


User provided reference genes

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