Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 2.0e-252 875.5 529 100.0
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 3.8e-219 765.0 526 88.8
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 2.6e-207 725.7 532 86.5
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.0e-192 677.2 525 82.9
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 3.4e-175 619.0 555 70.3
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.4e-173 612.8 556 70.5
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 5.9e-172 608.2 534 68.0
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 1.8e-168 596.7 558 70.1
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 3.4e-167 592.4 532 73.5
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.7e-163 580.1 534 73.0
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 5.4e-157 558.5 534 69.9
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 5.2e-152 542.0 560 66.8
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 5.1e-147 525.4 555 62.7
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.8e-144 516.9 532 63.7
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 2.4e-144 516.5 522 65.7
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 2.4e-144 516.5 536 61.8
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.2e-140 504.2 563 59.9
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 2.1e-140 503.4 558 59.9
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.0e-139 501.1 534 62.0
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.0e-139 501.1 555 61.8
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 1.7e-139 500.4 539 61.4
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 7.3e-138 495.0 544 61.2
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 7.3e-138 495.0 568 58.5
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.2e-137 491.9 542 60.3
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 4.0e-136 489.2 545 61.8
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.0e-135 486.9 545 61.1
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.7e-134 483.8 510 65.5
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.8e-134 482.6 545 61.7
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 6.4e-134 481.9 522 56.5
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 8.4e-134 481.5 553 59.1
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 2.1e-132 476.9 546 56.8
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.7e-132 476.5 540 62.4
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.0e-131 474.6 535 60.2
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.3e-131 474.2 544 61.4
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 1.3e-131 474.2 535 59.3
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.3e-131 473.4 567 58.2
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 3.0e-131 473.0 554 57.2
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 3.0e-131 473.0 522 52.5
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 4.3e-130 469.2 544 56.6
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 5.6e-130 468.8 585 54.7
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 9.6e-130 468.0 583 59.3
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 8.1e-129 464.9 545 59.4
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.1e-128 464.5 566 56.9
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.4e-128 464.2 590 54.7
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 1.8e-128 463.8 571 55.2
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 6.9e-128 461.8 567 55.6
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 1.5e-127 460.7 552 58.9
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 4.5e-127 459.1 525 60.8
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 5.8e-127 458.8 530 61.7
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 2.9e-126 456.4 541 61.2
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 1.1e-125 454.5 539 57.0
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.4e-125 454.1 538 60.4
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 1.4e-125 454.1 554 56.9
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 4.2e-125 452.6 536 57.1
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 5.4e-125 452.2 537 60.7
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 9.3e-125 451.4 543 58.7
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.2e-124 451.1 540 57.0
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.6e-124 450.7 536 61.0
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 2.7e-124 449.9 535 60.6
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 4.6e-124 449.1 547 58.7
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 6.0e-124 448.7 535 59.8
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.3e-123 447.6 513 52.6
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.3e-123 447.6 546 60.4
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 1.8e-123 447.2 519 60.3
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 3.0e-123 446.4 543 59.7
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 5.1e-123 445.7 538 58.9
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 6.7e-123 445.3 543 57.8
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 1.5e-122 444.1 550 59.1
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 4.3e-122 442.6 536 58.8
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 4.3e-122 442.6 562 56.9
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 5.6e-122 442.2 543 57.6
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.4e-122 441.8 524 60.5
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 9.6e-122 441.4 527 58.3
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 2.1e-121 440.3 538 58.0
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.8e-121 439.9 524 59.7
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 2.8e-121 439.9 578 53.6
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 8.1e-121 438.3 540 58.3
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.1e-121 438.3 527 58.8
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 2.4e-120 436.8 540 57.2
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 4.5e-119 432.6 529 59.2
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.5e-119 432.6 526 58.9
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.7e-118 430.6 540 58.0
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.2e-118 430.3 620 51.3
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.1e-117 427.9 537 57.5
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 1.4e-117 427.6 544 55.1
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.9e-117 427.2 544 51.1
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 1.9e-117 427.2 552 54.9
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 1.6e-116 424.1 545 58.0
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 1.0e-115 421.4 551 54.1
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 5.6e-114 415.6 517 51.5
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 9.6e-114 414.8 591 53.0
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.3e-113 414.5 557 53.5
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 1.3e-113 414.5 516 55.4
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 4.0e-112 409.5 613 54.6
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 4.0e-112 409.5 529 56.0
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 1.5e-111 407.5 548 53.1
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 7.6e-111 405.2 587 54.5
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 4.2e-109 399.4 506 49.8
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 4.2e-109 399.4 567 50.6
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 1.6e-108 397.5 540 49.8
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 3.0e-107 393.3 486 50.6
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.1e-106 391.3 549 48.8
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 1.4e-104 384.4 503 49.1
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 2.0e-103 380.6 473 55.8
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.0e-102 378.3 542 54.2
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 2.9e-102 376.7 571 53.4
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 5.0e-102 375.9 547 52.7
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.6e-100 370.9 511 55.8
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.7e-91 339.0 290 66.9
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 4.2e-85 319.7 521 47.8
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 1.8e-83 314.3 523 48.8
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 5.2e-83 312.8 337 60.5
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 6.7e-83 312.4 481 47.4
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 4.4e-82 309.7 579 47.2
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 5.9e-79 299.3 455 44.8
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.5e-77 293.9 556 43.2
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 5.2e-75 286.2 543 40.1
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 6.5e-70 269.2 211 70.6
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.5e-69 268.1 367 53.4
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 8.9e-59 232.3 165 75.2
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 4.5e-55 219.9 146 74.0
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 2.8e-52 210.7 247 52.2
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 3.4e-50 203.8 253 46.6
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 9.8e-50 202.2 126 85.7
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 3.2e-48 197.2 332 46.7
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 4.6e-47 193.4 243 47.7
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 6.0e-47 193.0 376 47.3
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 1.4e-43 181.8 240 50.4
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 9.2e-40 169.1 188 51.1
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 9.2e-40 169.1 188 51.1
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 2.6e-34 151.0 237 39.7
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 6.2e-28 129.8 101 70.3
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.6e-26 122.9 146 50.7
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 1.1e-24 119.0 152 52.6
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-23 115.5 122 52.5
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.5e-18 98.6 62 75.8
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 2.9e-17 94.4 62 79.0
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 3.8e-17 94.0 253 31.2
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 3.5e-15 87.4 61 70.5
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 1.0e-14 85.9 66 72.7
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.3e-14 85.5 77 55.8
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.1e-13 82.4 69 66.7
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.5e-13 82.0 73 64.4
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 5.6e-13 80.1 85 52.9
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 5.3e-11 73.6 67 56.7
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-10 72.4 101 46.5
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.9e-08 65.1 73 50.7
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.4e-08 64.7 37 78.4
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 4.6e-07 60.5 67 53.7
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 8.7e-06 56.2 37 81.1


User provided reference genes

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