Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 0.0e+00 3083.9 1695 100.0
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 0.0e+00 2853.9 1699 93.2
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 2657.9 1701 87.7
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 0.0e+00 2640.5 1701 87.5
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 0.0e+00 2306.2 1724 77.8
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 0.0e+00 2251.9 1713 75.4
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 0.0e+00 2216.8 1704 76.3
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 0.0e+00 2187.9 1680 76.0
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 0.0e+00 2158.3 1707 74.6
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 0.0e+00 2152.1 1719 73.6
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 0.0e+00 2122.4 1706 73.6
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 0.0e+00 1785.0 1724 63.3
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 0.0e+00 1677.9 1711 61.6
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 0.0e+00 1661.4 1712 60.0
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 0.0e+00 1659.0 1725 60.6
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 0.0e+00 1639.0 1713 60.7
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 0.0e+00 1631.3 1710 59.4
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 0.0e+00 1627.8 1709 60.6
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 0.0e+00 1623.6 1715 59.7
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1617.8 1747 57.4
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1587.4 1716 58.7
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1556.6 1658 57.1
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 0.0e+00 1550.8 1723 58.7
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 0.0e+00 1529.6 1805 55.6
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1526.5 1707 57.4
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1518.1 1704 57.9
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 0.0e+00 1514.6 1704 57.7
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 0.0e+00 1514.2 1704 57.8
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1507.7 1709 56.7
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 0.0e+00 1487.6 1717 56.7
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 0.0e+00 1477.2 1726 55.6
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 0.0e+00 1476.8 1744 53.6
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 0.0e+00 1473.8 1924 51.7
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 0.0e+00 1471.1 1703 56.0
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 0.0e+00 1466.4 1512 61.6
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 0.0e+00 1465.3 1735 55.5
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 0.0e+00 1464.9 1723 53.9
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 0.0e+00 1457.6 1737 54.7
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1446.8 1719 54.0
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 0.0e+00 1436.0 1729 54.1
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 0.0e+00 1419.4 1744 53.2
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 0.0e+00 1411.0 1780 51.5
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1408.3 1414 61.4
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 0.0e+00 1360.9 1519 60.0
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 0.0e+00 1347.4 1610 55.7
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 0.0e+00 1338.9 1731 50.1
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 0.0e+00 1329.3 1211 65.9
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 0.0e+00 1320.8 1715 52.4
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 0.0e+00 1305.4 1719 52.2
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1303.1 1801 50.3
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1300.8 1718 49.9
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 0.0e+00 1297.3 1745 50.9
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 0.0e+00 1293.5 1731 51.4
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 0.0e+00 1293.1 1730 51.3
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 0.0e+00 1287.7 1309 63.5
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 0.0e+00 1285.8 1748 49.9
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 0.0e+00 1282.3 1723 48.0
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 0.0e+00 1270.4 1725 51.4
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 0.0e+00 1265.4 1242 62.8
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 0.0e+00 1264.6 1801 50.5
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 0.0e+00 1233.0 1699 49.3
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 0.0e+00 1226.1 1691 48.8
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 0.0e+00 1221.8 1751 47.9
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 0.0e+00 1200.7 1500 52.9
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 0.0e+00 1191.4 1685 48.4
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 0.0e+00 1177.9 1479 54.0
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 0.0e+00 1170.6 1737 46.5
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 0.0e+00 1142.9 1249 58.8
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1139.4 959 66.9
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 0.0e+00 1122.8 1259 57.8
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 0.0e+00 1096.3 1489 51.8
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 0.0e+00 1084.3 1230 56.9
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 0.0e+00 1080.5 1248 55.9
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 9.4e-304 1047.7 1372 51.2
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 7.7e-290 1001.5 1705 42.9
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.1e-287 993.4 954 61.8
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 1.3e-281 974.2 1517 47.1
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 2.1e-271 940.3 820 65.5
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 3.2e-267 926.4 1037 60.0
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 3.5e-250 869.8 1495 44.4
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 4.0e-246 856.3 1434 45.4
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 5.6e-240 835.9 1135 49.5
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 6.6e-233 812.4 1234 48.8
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 6.1e-170 603.2 1084 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 8.9e-161 572.8 962 41.7
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.6e-141 507.3 542 56.8
Dinv10683 Davidia involucrata HOM05D001674 ORTHO05D008599 8.6e-132 476.5 735 44.9
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.7e-130 470.7 850 41.2
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 1.6e-125 455.7 1269 32.2
Actinidia09244 Actinidia chinensis HOM05D001674 ORTHO05D008599 2.4e-113 415.2 719 42.0
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.0e-84 318.5 706 37.7
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 8.2e-74 283.9 257 58.4
Dinv38778 Davidia involucrata HOM05D001674 ORTHO05D008599 9.4e-70 270.4 744 36.3
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 6.1e-69 267.7 245 60.4
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 7.7e-56 224.2 213 59.6
Lj5A106T69 Lonicera japonica HOM05D001674 ORTHO05D008599 4.2e-54 218.4 495 36.2
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 3.0e-52 212.2 244 49.2
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 7.5e-43 181.0 165 60.0
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 2.2e-42 179.5 169 56.2
unitig_37.g12721 Utricularia gibba HOM05D001674 ORTHO05D008599 6.6e-39 167.9 180 53.9
Cpa.g.sc94.4 Carica papaya HOM05D001674 ORTHO05D008599 4.3e-38 165.2 178 53.9
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 5.4e-33 148.3 131 71.0
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-31 143.7 279 36.6
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 1.1e-30 140.6 1358 23.3
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 3.2e-25 122.5 133 52.6
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 2.7e-24 119.4 232 33.6
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.3e-22 112.5 278 35.6
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-21 108.2 98 58.2
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 2.0e-19 103.2 279 28.0
PGSC0003DMG400006818 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.4e-17 97.1 160 39.4
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 9.2e-17 94.4 87 58.6
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.1e-16 93.2 59 76.3
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-15 89.0 61 62.3
CBR_g23187 Chara braunii HOM05D001674 ORTHO05D000353 2.1e-13 83.2 57 70.2


User provided reference genes

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