Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 2648.2 1366 100.0
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 2463.3 1384 92.5
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 2389.0 1388 89.7
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 2318.5 1387 86.4
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 2263.8 1386 85.4
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 2228.0 1385 83.7
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 2204.9 1364 83.2
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 2179.1 1436 79.5
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 2174.8 1424 80.1
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 2159.8 1434 78.6
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1909.4 1210 82.0
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1878.6 1408 72.5
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1862.4 1413 70.2
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1848.9 1386 71.9
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1804.6 1448 69.1
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1782.3 1480 65.2
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1777.3 1414 67.5
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1774.2 1390 68.5
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1771.1 1479 65.7
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1760.0 1484 65.6
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1758.4 1484 65.6
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1758.0 1407 68.4
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1748.8 1479 65.1
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1739.5 1412 66.3
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1739.2 1543 63.4
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1737.2 1408 66.5
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1733.8 1389 68.2
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1721.8 1454 64.6
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1721.8 1454 64.6
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1718.0 1389 67.2
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1709.5 1386 67.2
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1708.3 1414 66.4
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1708.0 1484 64.4
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1703.0 1400 65.7
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1692.2 1397 65.5
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1690.6 1393 65.8
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1687.9 1467 65.2
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1682.2 1391 65.2
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1647.9 1396 64.5
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1637.9 1436 62.6
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1630.2 1391 63.3
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1597.8 1420 61.1
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1597.0 1536 57.4
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1584.7 1458 58.9
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1578.1 1237 67.1
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1575.8 1417 61.8
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1574.3 1407 62.9
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1555.4 1400 63.1
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1553.1 1452 59.0
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1545.4 1351 62.8
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1545.0 1450 60.1
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1543.1 1363 63.2
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1527.7 1275 65.9
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1522.7 1317 62.6
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1516.1 1393 59.1
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1509.6 1222 64.6
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1498.4 1359 61.2
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1497.3 1307 62.0
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1493.0 1417 59.4
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1488.4 1481 56.7
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1476.1 1375 60.9
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1467.6 1422 57.2
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1465.3 1233 62.5
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1456.8 1469 56.6
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1456.4 1425 57.4
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1456.4 1528 52.9
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1454.5 1429 57.3
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1453.3 1424 57.1
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1453.0 1051 69.7
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1452.6 1301 60.3
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1448.3 1426 56.8
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1442.2 1421 56.9
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1425.2 1377 57.4
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1422.9 1427 56.1
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1421.4 1440 55.6
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1414.8 1193 63.4
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1414.1 1529 53.6
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1413.7 1434 55.4
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1412.5 1374 56.8
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1397.5 1248 63.3
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1396.7 1301 58.9
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1367.4 1482 53.6
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1349.3 1239 57.4
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1324.3 1301 55.6
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1320.8 1352 55.3
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1305.4 1106 66.4
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1275.0 1454 49.9
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1274.6 1249 56.1
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1219.9 1490 49.3
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1210.7 858 71.0
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1159.4 766 75.5
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1145.6 765 72.8
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 0.0e+00 1120.1 860 66.5
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1104.4 1239 52.4
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 4.9e-295 1018.5 1028 51.2
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 4.6e-285 985.3 883 61.7
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 6.0e-285 984.9 1075 49.7
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 7.4e-283 978.0 1027 50.5
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 5.7e-259 898.7 952 58.2
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 2.4e-241 840.1 1007 47.7
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 8.8e-236 821.6 482 81.1
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.0e-227 793.9 769 60.9
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 3.0e-220 770.0 746 63.1
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 9.8e-219 765.0 746 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 1.2e-211 741.5 817 49.3
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.3e-175 621.7 484 65.1
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 3.6e-173 613.6 809 44.5
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.4e-145 521.9 438 71.0
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 4.1e-140 503.8 499 53.3
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 6.3e-133 479.9 316 72.8
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 8.2e-133 479.6 370 66.8
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 1.5e-129 468.8 538 54.1
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 4.2e-121 440.7 326 66.0
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.2e-109 401.7 291 69.4
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 2.3e-106 391.7 656 47.1
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 2.9e-101 374.8 206 89.3
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 5.0e-98 364.0 682 44.4
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.0e-90 338.2 235 70.6
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.3e-85 322.8 226 73.0
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 1.2e-83 316.2 208 72.1
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.5e-75 288.1 172 77.3
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 2.6e-62 245.4 925 26.1
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 6.4e-61 240.7 729 28.3
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 5.1e-58 231.1 144 73.6
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 5.6e-57 227.6 144 78.5
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.2e-53 215.7 174 64.9
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 7.1e-52 210.7 115 87.0
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 3.5e-51 208.4 695 25.6
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 3.3e-49 201.8 153 71.2
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 2.6e-46 192.2 530 34.0
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 7.9e-43 180.6 229 48.0
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 1.5e-41 176.4 110 77.3
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 4.3e-41 174.9 104 82.7
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 6.3e-40 171.0 327 38.8
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 1.4e-39 169.9 154 60.4
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 2.4e-39 169.1 122 74.6
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 1.1e-36 160.2 157 56.1
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 1.9e-36 159.5 115 64.3
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 1.6e-35 156.4 156 51.9
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 2.0e-30 139.4 76 81.6
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 2.6e-30 139.0 156 53.8
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 3.4e-30 138.7 102 64.7
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 7.7e-30 137.5 163 54.6
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 1.0e-29 137.1 98 71.4
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 5.5e-28 131.3 693 22.9
Medtr4g113340 Medicago truncatula HOM05D004216 ORTHO05D004926 1.0e-26 127.1 86 77.9
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 1.4e-26 126.7 100 60.0
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 3.0e-26 125.6 146 52.1
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 3.3e-25 122.1 116 57.8
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 9.7e-25 120.6 206 43.2
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.4e-23 116.7 80 72.5
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 6.5e-21 107.8 88 61.4
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 6.5e-21 107.8 145 46.2
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 1.0e-18 100.5 63 77.8
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 5.2e-18 98.2 60 73.3
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 7.4e-17 94.4 98 55.1
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 4.1e-15 88.6 75 64.0
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 5.0e-13 81.6 70 65.7
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 8.5e-13 80.9 54 55.6
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 1.2e-11 77.0 87 52.9
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 6.1e-11 74.7 68 58.8
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.4e-10 73.6 48 77.1
Os09g0410300 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 8.8e-10 70.9 234 37.2
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.2e-09 70.5 64 60.9
FAN27G1082 Fragaria x ananassa HOM05D002132 ORTHO05D002168 4.4e-09 68.6 399 21.6
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 5.7e-09 68.2 50 64.0
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 1.8e-07 63.2 60 53.3
SalBow4G2233 Salvia bowleyana HOM05D002132 ORTHO05D002168 3.1e-07 62.4 350 20.9
Lj7A256T44 Lonicera japonica HOM05D002132 ORTHO05D002168 3.5e-06 58.9 332 22.3
SHI18922 Sapria himalayana HOM05D004216 ORTHO05D004926 4.5e-06 58.5 30 80.0
Ca_15815_v3 Cicer arietinum L. HOM05D002132 ORTHO05D002168 7.7e-06 57.8 301 20.3
Ca_15849_v3 Cicer arietinum L. HOM05D002132 ORTHO05D002168 7.7e-06 57.8 301 20.3
Psat5g032480 Pisum sativum HOM05D002132 ORTHO05D002168 7.7e-06 57.8 303 22.4


User provided reference genes

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