Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 0.0e+00 1298.1 664 100.0
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 0.0e+00 1233.8 664 95.6
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 0.0e+00 1151.3 664 89.3
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 0.0e+00 1135.9 665 88.6
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 5.5e-308 1060.4 664 81.8
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 6.1e-307 1057.0 665 82.1
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 9.1e-303 1043.1 662 81.9
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 3.4e-302 1041.2 660 82.3
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 2.3e-298 1028.5 661 79.9
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 1.1e-297 1026.2 661 79.9
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 1.1e-287 993.0 665 77.4
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 2.5e-284 981.9 678 75.7
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 1.4e-250 869.8 657 68.0
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 7.1e-247 857.4 674 66.0
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 4.6e-246 854.7 666 66.7
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 3.2e-239 832.0 672 65.3
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 9.2e-239 830.5 659 65.9
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 2.1e-238 829.3 663 65.9
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 1.0e-237 827.0 668 65.4
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 2.3e-237 825.9 659 64.9
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 3.0e-237 825.5 662 65.3
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 3.9e-237 825.1 657 65.9
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.5e-236 823.2 662 65.3
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.5e-236 822.4 659 65.6
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 4.7e-235 818.1 664 64.8
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 9.9e-233 810.4 666 62.2
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 2.9e-232 808.9 659 62.7
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 9.3e-231 803.9 667 63.0
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 1.2e-230 803.5 670 64.8
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 9.6e-228 793.9 674 63.6
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 9.6e-228 793.9 672 63.4
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 4.8e-227 791.6 665 63.9
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.8e-226 789.6 672 62.2
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 5.8e-225 784.6 658 63.2
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.8e-225 784.6 636 65.1
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.3e-224 783.5 658 63.5
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 1.1e-223 780.4 666 62.0
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 1.4e-223 780.0 672 62.1
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 6.0e-222 774.6 658 62.6
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 3.0e-221 772.3 675 61.6
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.3e-219 766.9 674 61.6
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.8e-218 763.1 656 61.9
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 4.0e-218 761.9 684 59.4
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 4.0e-218 761.9 684 59.4
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.2e-217 760.4 678 60.9
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 2.0e-217 759.6 767 56.6
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 3.4e-217 758.8 659 61.6
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 7.6e-217 757.7 636 63.1
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 2.2e-216 756.1 918 48.1
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 6.4e-216 754.6 668 60.8
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 6.7e-213 744.6 671 60.8
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 8.7e-213 744.2 668 59.9
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 3.3e-212 742.3 665 61.1
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 4.3e-212 741.9 669 61.1
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 9.0e-210 734.2 663 60.0
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.2e-209 733.8 668 60.3
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 2.0e-209 733.0 671 58.3
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 3.4e-209 732.3 670 58.5
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 5.8e-209 731.5 668 58.2
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 7.6e-209 731.1 663 59.9
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 7.6e-209 731.1 663 59.7
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 8.4e-208 727.6 665 60.0
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 5.5e-207 724.9 687 57.9
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 9.6e-204 714.1 674 58.8
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 1.1e-202 710.7 664 57.8
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 4.5e-201 705.3 637 60.1
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 3.2e-199 699.1 676 56.8
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 4.2e-199 698.7 661 58.1
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 5.5e-199 698.4 667 56.4
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 9.3e-199 697.6 667 56.7
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 1.2e-198 697.2 661 58.1
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.8e-197 693.3 669 57.0
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 3.0e-197 692.6 662 56.6
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 2.5e-196 689.5 659 57.7
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 4.3e-196 688.7 659 57.2
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 4.3e-196 688.7 653 57.6
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 7.4e-196 688.0 636 58.3
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 2.8e-195 686.0 659 56.9
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 3.7e-195 685.6 659 57.4
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 1.8e-194 683.3 588 62.1
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 2.4e-194 682.9 659 57.4
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 2.2e-192 676.4 658 56.5
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 5.0e-192 675.2 741 51.4
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 2.5e-191 672.9 667 56.4
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 4.2e-191 672.2 656 54.9
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 9.4e-191 671.0 665 56.5
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.2e-190 670.6 661 54.3
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 1.0e-189 667.5 659 55.8
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.5e-188 663.7 661 53.9
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 1.4e-186 657.1 666 52.6
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 5.3e-186 655.2 660 55.8
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 1.1e-183 647.5 666 52.0
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 1.2e-182 644.0 676 53.4
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 6.1e-174 615.1 672 50.6
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 7.5e-172 608.2 668 50.4
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 1.0e-168 597.8 679 52.7
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 3.8e-168 595.9 630 51.1
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 4.7e-158 562.4 661 47.5
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 8.0e-150 535.0 680 45.6
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 5.9e-145 518.8 495 56.0
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 8.6e-144 515.0 560 50.9
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 8.6e-144 515.0 712 43.8
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 1.0e-136 491.5 296 85.8
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 1.1e-135 488.0 655 43.8
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.7e-128 464.2 526 47.9
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 7.8e-113 412.1 549 44.6
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 3.0e-88 330.5 725 31.7
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 2.6e-84 317.4 536 38.4
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 6.5e-83 312.8 659 34.1
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.3e-80 304.3 374 47.9
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 2.2e-75 287.7 666 30.0
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.9e-60 236.5 161 77.6
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 5.5e-50 203.4 470 31.5
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.1e-42 179.1 146 65.8
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 2.5e-42 177.9 180 52.2
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 8.8e-40 169.5 404 33.4
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 1.1e-37 162.5 136 64.7
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 2.2e-30 138.3 102 76.5
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 7.3e-26 123.2 159 50.9
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.2e-25 122.5 218 40.8
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.7e-20 104.8 210 33.8
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.1e-17 95.1 58 70.7
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 2.6e-15 88.2 125 44.8
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 1.1e-13 82.8 86 46.5
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 7.8e-12 76.6 50 74.0
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 3.9e-11 74.3 70 55.7
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 3.6e-09 67.8 69 50.7
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.2e-06 58.5 37 78.4
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 3.8e-06 57.8 37 78.4


User provided reference genes

Program Settings