Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 2.2e-176 622.1 294 100.0
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 7.4e-164 580.5 294 91.2
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 1.4e-154 549.7 290 86.2
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.4e-154 549.7 293 85.7
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 3.4e-153 545.0 292 85.3
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 3.4e-153 545.0 291 86.3
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 6.1e-150 534.3 293 83.6
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 4.8e-147 524.6 291 83.2
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 2.3e-141 505.8 293 80.5
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 3.7e-139 498.4 291 77.0
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 1.8e-138 496.1 293 75.4
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 7.7e-137 490.7 293 76.1
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 8.5e-136 487.3 291 75.3
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 8.5e-136 487.3 294 75.5
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.4e-135 486.5 293 76.5
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 2.5e-135 485.7 293 75.1
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 5.5e-135 484.6 293 73.0
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 7.2e-135 484.2 293 75.4
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 6.1e-134 481.1 293 72.7
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 1.4e-133 479.9 293 73.4
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 2.3e-133 479.2 293 72.7
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 3.3e-132 475.3 289 75.1
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 9.7e-132 473.8 290 75.5
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 9.7e-132 473.8 290 72.4
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 9.7e-132 473.8 290 73.1
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.3e-131 473.4 293 71.3
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 2.8e-131 472.2 290 72.4
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 3.7e-131 471.9 293 72.7
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.7e-131 471.9 290 72.8
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 3.7e-131 471.9 290 72.8
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 6.3e-131 471.1 287 73.9
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 3.1e-130 468.8 290 71.4
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 7.0e-130 467.6 293 71.7
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 9.1e-130 467.2 293 70.6
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 9.1e-130 467.2 290 70.7
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 1.2e-129 466.8 293 70.6
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.2e-129 466.8 293 70.6
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 2.0e-129 466.1 294 71.4
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 2.0e-129 466.1 317 67.8
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 4.5e-129 464.9 293 71.7
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 1.0e-128 463.8 361 62.3
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 1.3e-128 463.4 293 69.6
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.7e-128 463.0 293 71.7
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 3.8e-128 461.8 290 71.0
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 3.8e-128 461.8 291 71.5
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 1.9e-127 459.5 291 71.8
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 2.5e-127 459.1 293 70.3
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 4.2e-127 458.4 290 70.0
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 5.5e-127 458.0 291 70.1
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 9.4e-127 457.2 317 65.9
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 2.1e-126 456.1 291 69.1
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.6e-126 455.3 291 69.4
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 4.7e-126 454.9 291 68.7
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 6.1e-126 454.5 290 69.7
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 6.1e-126 454.5 308 66.9
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 3.0e-125 452.2 300 69.0
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 5.2e-125 451.4 290 70.0
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 5.2e-125 451.4 291 68.4
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 8.8e-125 450.7 291 68.7
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 2.6e-124 449.1 252 80.6
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 5.7e-124 448.0 290 69.0
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 5.7e-124 448.0 289 68.5
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 3.7e-123 445.3 292 68.5
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 1.1e-122 443.7 290 70.3
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 7.0e-122 441.0 291 69.1
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 7.0e-122 441.0 304 66.1
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.6e-121 439.9 291 66.0
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 1.3e-120 436.8 285 67.7
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 2.5e-119 432.6 290 66.9
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 2.5e-119 432.6 270 72.6
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 2.5e-119 432.6 293 67.6
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 3.2e-119 432.2 292 66.4
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 9.4e-119 430.6 293 66.9
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 4.7e-118 428.3 292 65.8
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 3.0e-117 425.6 296 63.9
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 3.0e-117 425.6 296 63.9
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 4.0e-117 425.2 293 65.2
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 4.0e-117 425.2 294 65.3
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 5.2e-117 424.9 293 65.9
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 6.8e-117 424.5 292 65.1
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 8.8e-117 424.1 291 64.9
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.2e-116 423.7 294 65.0
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 1.5e-116 423.3 292 64.0
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 3.4e-116 422.2 297 65.0
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 1.3e-115 420.2 295 64.7
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 1.7e-115 419.9 291 64.6
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.2e-115 419.5 272 69.9
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 6.3e-115 417.9 291 63.6
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 5.4e-114 414.8 295 63.7
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 2.0e-113 412.9 291 63.6
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 1.6e-110 403.3 276 67.8
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 1.5e-108 396.7 293 60.8
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 1.3e-107 393.7 261 68.2
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.3e-107 393.7 292 61.0
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 7.0e-106 387.9 291 59.8
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 2.0e-105 386.3 294 62.2
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 9.5e-103 377.5 290 58.6
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 9.8e-100 367.5 226 73.9
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 8.3e-99 364.4 265 64.9
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 3.0e-96 355.9 306 54.9
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 4.9e-91 338.6 290 51.0
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.5e-89 332.4 290 51.4
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.3e-88 330.5 180 89.4
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 1.5e-87 327.0 202 72.3
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.9e-82 310.1 201 67.7
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 2.6e-76 289.7 290 47.2
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 9.9e-76 287.7 302 49.0
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 2.5e-71 273.1 241 56.0
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 2.3e-64 250.0 260 48.5
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 3.6e-54 216.1 218 50.9
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 5.8e-52 208.8 194 51.0
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.7e-51 207.2 235 42.6
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 4.2e-50 202.6 102 93.1
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.2e-44 184.5 129 61.2
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 1.1e-42 177.9 400 29.8
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 9.1e-21 105.1 72 62.5
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.5e-20 104.4 102 52.0
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.6e-20 103.6 60 76.7
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 5.0e-19 99.4 192 33.3
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 4.2e-18 96.3 61 68.9
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 9.4e-18 95.1 61 70.5
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 1.1e-13 81.6 43 79.1
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 7.0e-13 79.0 50 68.0
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 2.0e-12 77.4 65 52.3
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 3.7e-06 56.6 44 65.9


User provided reference genes

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