Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 8.0e-159 563.9 328 100.0
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.6e-151 539.7 316 97.5
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 4.1e-131 471.9 277 94.9
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 7.8e-130 467.6 286 93.7
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 3.6e-127 458.8 323 86.4
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 3.9e-121 438.7 327 82.6
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 1.0e-113 414.1 326 79.4
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 5.6e-112 408.3 323 75.5
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.5e-109 400.2 328 74.7
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 4.4e-109 398.7 361 70.6
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 9.2e-107 391.0 290 79.7
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 1.2e-106 390.6 328 72.9
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 4.6e-106 388.7 327 72.5
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 3.9e-105 385.6 288 80.2
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 5.1e-105 385.2 329 72.3
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.2e-103 380.6 360 68.9
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 6.2e-103 378.3 337 69.1
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 2.4e-102 376.3 322 69.9
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 8.9e-102 374.4 348 66.7
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 2.0e-101 373.2 294 75.9
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 4.4e-101 372.1 339 66.7
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.1e-99 367.5 326 69.9
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 3.2e-99 365.9 327 69.1
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 7.1e-99 364.8 327 68.5
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 9.3e-99 364.4 263 83.3
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 9.3e-99 364.4 325 70.2
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 9.3e-99 364.4 327 70.0
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 1.2e-98 364.0 326 70.6
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.2e-98 364.0 329 69.9
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 2.7e-98 362.8 334 68.0
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.3e-97 360.5 308 71.4
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 2.3e-97 359.8 331 67.4
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.5e-96 357.1 290 73.4
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 2.5e-96 356.3 331 67.4
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 2.5e-96 356.3 330 68.5
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 7.3e-96 354.8 294 72.8
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 3.6e-95 352.4 337 66.5
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.1e-94 349.4 299 71.2
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.2e-93 347.4 350 63.7
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.5e-93 347.1 361 63.2
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.4e-93 345.9 299 70.6
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.2e-92 343.2 327 67.3
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 3.8e-92 342.4 291 71.8
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 3.2e-91 339.3 324 67.3
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 1.2e-90 337.4 328 66.5
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 3.5e-90 335.9 329 66.6
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 7.9e-90 334.7 328 67.1
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 3.9e-89 332.4 334 65.9
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.9e-88 330.1 292 69.5
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.1e-87 326.6 289 69.9
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.1e-87 326.6 325 63.7
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 3.6e-87 325.9 336 63.1
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 8.1e-87 324.7 293 68.9
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 8.1e-87 324.7 324 65.1
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.8e-86 323.6 331 64.0
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 2.4e-86 323.2 322 66.1
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 4.0e-86 322.4 337 62.9
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 4.2e-83 312.4 299 65.2
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 7.1e-83 311.6 322 61.8
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.3e-81 306.6 295 63.4
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.3e-81 306.6 282 66.3
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 5.1e-81 305.4 295 63.1
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 2.5e-80 303.1 336 59.2
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 4.3e-80 302.4 321 59.5
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 4.3e-80 302.4 326 60.7
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 5.6e-80 302.0 340 61.2
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.6e-79 300.4 356 57.0
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.6e-79 300.4 323 60.7
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.4e-78 297.4 356 56.7
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 1.8e-78 297.0 343 60.6
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.4e-78 296.6 295 63.1
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 3.1e-78 296.2 320 59.7
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.2e-77 294.3 323 57.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 7.6e-77 291.6 242 71.9
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 7.6e-77 291.6 303 62.0
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 8.4e-76 288.1 323 59.8
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.9e-75 287.0 324 59.6
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.9e-75 287.0 344 57.6
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 2.7e-74 283.1 299 59.9
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.3e-73 280.8 326 56.7
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 1.3e-73 280.8 314 60.5
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 3.9e-73 279.3 335 56.7
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.8e-70 270.4 273 64.1
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.4e-70 270.0 273 63.7
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 4.1e-70 269.2 274 62.0
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 6.9e-70 268.5 348 54.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.6e-69 266.5 327 55.4
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 5.9e-69 265.4 327 55.0
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.0e-68 264.6 306 57.2
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.3e-68 264.2 273 64.1
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 2.9e-68 263.1 327 54.7
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 8.5e-68 261.5 329 54.7
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.2e-67 259.2 219 70.8
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 7.2e-67 258.5 328 54.6
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 9.3e-67 258.1 344 52.3
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-66 257.7 344 52.3
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 2.1e-66 256.9 324 54.6
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 2.1e-66 256.9 324 54.6
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 2.7e-66 256.5 354 52.0
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.3e-64 249.6 323 54.2
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 3.3e-64 249.6 292 57.2
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 9.7e-64 248.1 214 68.2
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 3.1e-62 243.0 338 51.2
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 6.9e-62 241.9 334 50.9
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.2e-61 241.1 337 50.4
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 4.5e-61 239.2 306 55.6
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 6.5e-60 235.3 200 67.0
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 7.9e-58 228.4 277 55.2
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.3e-57 226.9 310 52.3
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 5.1e-57 225.7 207 63.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 5.1e-57 225.7 207 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 6.7e-57 225.3 231 58.4
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 8.2e-55 218.4 260 56.2
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 5.9e-53 212.2 190 66.3
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.7e-52 210.7 372 47.3
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.6e-50 204.1 320 48.1
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.6e-50 203.0 246 53.3
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 3.3e-48 196.4 268 52.2
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 7.4e-48 195.3 338 44.1
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 2.8e-47 193.4 462 37.7
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 3.7e-47 193.0 321 48.3
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.5e-45 186.4 325 43.4
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 7.7e-45 185.3 288 48.3
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.0e-44 184.9 318 48.4
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 2.9e-44 183.3 185 62.7
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 2.9e-44 183.3 326 45.4
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.1e-43 181.4 338 40.5
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.2e-43 179.9 178 65.2
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 4.2e-43 179.5 163 64.4
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 4.0e-41 172.9 301 43.5
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 4.4e-40 169.5 306 44.1
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.4e-38 164.5 293 47.1
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.2e-34 151.4 147 64.6
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 7.2e-27 125.6 190 50.5
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 6.6e-20 102.4 142 44.4
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.9e-19 100.9 96 64.6
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 8.9e-17 92.0 159 40.3
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 2.3e-12 77.4 87 54.0
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 1.2e-10 71.6 94 53.2
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 3.4e-08 63.5 57 68.4
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 8.3e-07 58.9 172 32.0
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 3.2e-06 57.0 222 28.4
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 4.1e-06 56.6 57 61.4


User provided reference genes

Program Settings