Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 0.0e+00 1209.1 638 100.0
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 0.0e+00 1134.0 638 94.4
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 8.1e-309 1063.1 641 88.3
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 3.9e-303 1044.3 641 87.8
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.2e-285 985.3 643 82.1
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 3.7e-285 984.6 640 82.0
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.8e-279 965.7 642 80.7
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.6e-267 926.0 670 75.5
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 4.0e-263 911.4 587 81.3
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 7.5e-262 907.1 653 75.5
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.8e-236 822.8 640 71.2
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 3.9e-234 815.1 657 68.3
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.3e-226 790.0 669 65.2
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.0e-226 788.9 650 66.6
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 1.1e-225 786.9 629 67.2
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.9e-225 786.2 651 66.7
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.6e-224 781.9 649 64.3
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 2.2e-221 772.7 651 64.7
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 3.7e-221 771.9 662 65.4
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 3.7e-221 771.9 659 64.5
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 4.9e-221 771.5 663 64.6
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.1e-220 770.4 656 63.7
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 3.2e-220 768.8 664 63.6
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 3.2e-220 768.8 653 63.9
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 2.7e-219 765.8 678 62.8
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.7e-219 765.8 661 63.5
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 4.6e-219 765.0 661 63.2
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.8e-219 764.2 654 63.1
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.0e-218 763.8 682 62.5
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.7e-218 763.1 682 62.3
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 6.6e-218 761.1 654 63.1
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 8.6e-218 760.8 637 65.6
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.2e-216 756.9 637 64.1
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 4.7e-216 755.0 646 63.2
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 2.4e-215 752.7 625 64.3
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 8.9e-215 750.7 652 63.2
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 2.0e-214 749.6 622 64.6
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 5.8e-214 748.0 690 60.3
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 7.6e-214 747.7 655 62.7
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.7e-213 746.5 663 63.2
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.1e-212 743.8 662 61.8
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.6e-211 740.0 651 60.8
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 2.1e-211 739.6 646 62.2
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 6.6e-210 734.6 647 62.9
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 2.5e-209 732.6 662 62.8
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 5.6e-209 731.5 660 62.6
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 9.6e-209 730.7 662 62.7
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 6.2e-208 728.0 637 62.0
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 8.1e-208 727.6 651 61.1
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.4e-207 726.1 661 61.1
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 3.1e-207 725.7 630 61.3
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 5.8e-206 721.5 638 63.0
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 7.6e-206 721.1 638 63.0
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 9.9e-206 720.7 639 61.3
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.7e-205 719.9 679 60.8
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.7e-205 719.9 679 60.8
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 8.4e-205 717.6 677 58.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 8.4e-205 717.6 680 60.6
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 8.4e-205 717.6 649 61.0
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 4.2e-204 715.3 660 59.2
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 2.7e-203 712.6 635 62.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 4.6e-203 711.8 573 64.6
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 4.6e-203 711.8 635 62.2
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 3.3e-201 705.7 658 57.9
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 2.4e-199 699.5 641 58.2
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 4.0e-199 698.7 643 57.5
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.0e-198 696.4 650 59.1
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 2.6e-198 696.0 668 59.4
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 5.8e-198 694.9 663 59.4
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 2.2e-197 693.0 654 57.8
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 3.8e-197 692.2 654 57.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.9e-196 689.9 654 57.6
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.9e-196 689.9 645 58.1
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.4e-196 689.5 652 58.0
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 3.2e-196 689.1 616 59.7
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 1.0e-194 684.1 643 57.9
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.3e-194 683.7 589 61.5
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 2.3e-194 682.9 643 59.4
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 8.7e-194 681.0 631 57.7
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.3e-192 677.2 661 59.9
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 3.1e-191 672.5 669 56.8
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 7.6e-190 667.9 654 56.6
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 4.9e-189 665.2 645 56.3
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 4.9e-189 665.2 643 58.3
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 3.2e-188 662.5 538 63.4
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.2e-187 660.6 661 57.0
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.8e-184 649.4 639 56.2
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.0e-183 645.6 578 61.8
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.9e-181 639.4 667 55.6
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.3e-178 630.6 511 64.8
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.7e-173 613.6 657 54.0
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 2.9e-173 612.8 600 59.7
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.1e-172 610.9 656 53.8
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 7.2e-172 608.2 672 52.4
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 9.4e-172 607.8 579 60.6
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 4.6e-171 605.5 634 54.4
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 3.7e-168 595.9 626 56.5
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 3.1e-167 592.8 639 53.8
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 3.4e-166 589.3 668 52.8
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.1e-159 567.8 646 51.1
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.1e-151 539.7 439 67.4
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 4.7e-139 499.2 533 53.1
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.7e-136 489.6 581 47.5
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 2.2e-128 463.8 612 45.8
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.8e-123 446.8 662 41.8
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 3.2e-119 433.3 362 64.9
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 5.0e-117 426.0 645 42.0
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 6.8e-114 415.6 356 66.9
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.9e-111 407.5 639 41.8
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 6.6e-101 372.5 421 54.6
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.2e-99 368.2 643 36.4
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 2.1e-94 350.9 544 42.1
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.6e-91 341.3 425 48.7
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.1e-90 337.0 295 61.4
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.2e-87 326.6 314 55.4
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.9e-79 301.2 244 65.6
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 5.3e-74 283.1 361 46.8
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 6.1e-62 243.0 684 28.5
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.3e-61 241.9 652 29.6
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 4.3e-52 210.3 260 47.7
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 5.9e-49 199.9 149 61.7
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 7.7e-49 199.5 253 47.8
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.0e-48 199.1 191 59.2
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.0e-45 189.1 115 80.9
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 2.2e-43 181.4 253 43.5
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 4.8e-43 180.3 177 59.9
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 3.5e-41 174.1 253 42.7
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.0e-40 172.6 616 26.0
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 7.2e-39 166.4 99 84.8
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 2.3e-37 161.4 151 62.3
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 7.7e-33 146.4 134 52.2
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 2.7e-30 137.9 98 65.3
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 2.2e-27 128.3 126 50.8
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 3.8e-24 117.5 582 24.1
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.6e-22 112.1 187 39.6
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 6.1e-22 110.2 299 28.4
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 2.0e-20 105.1 77 75.3
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 3.7e-19 100.9 168 41.1
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.1e-18 99.4 613 23.7
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.5e-15 89.0 142 40.8
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.9e-15 88.6 121 47.9
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 5.5e-15 87.0 142 40.1
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 5.5e-15 87.0 142 40.1
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 5.5e-15 87.0 142 40.1
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 5.5e-15 87.0 142 40.1
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.2e-14 85.9 142 39.4
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 2.3e-13 81.6 44 84.1
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.5e-12 79.0 99 53.5
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.4e-12 77.4 120 41.7
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 4.4e-12 77.4 148 37.2
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 3.7e-11 74.3 72 58.3
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 4.9e-11 73.9 41 95.1
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 1.2e-09 69.3 45 66.7


User provided reference genes

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