Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 5.0e-105 384.4 188 100.0
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.5e-104 382.1 188 98.9
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 4.3e-101 371.3 188 95.2
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 4.3e-101 371.3 188 95.2
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.4e-99 366.3 188 94.1
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.4e-99 365.5 188 92.6
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 4.1e-99 364.8 188 93.6
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.2e-98 363.2 188 91.5
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.2e-98 363.2 188 90.4
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.6e-98 362.1 188 92.0
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 1.6e-95 352.8 188 88.3
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 7.9e-95 350.5 188 86.7
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 7.9e-95 350.5 188 88.8
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 3.0e-94 348.6 188 86.7
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.0e-94 348.6 188 86.2
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 5.1e-94 347.8 188 86.2
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 3.3e-93 345.1 188 86.7
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 86.2
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 86.2
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 85.1
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 85.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 85.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 85.6
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 85.1
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 84.6
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 84.6
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 84.6
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 4.8e-92 341.3 187 85.6
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 84.6
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 84.0
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 83.5
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.6
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.1
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.1
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 85.1
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.8e-91 339.3 186 83.3
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.0
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.6
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 85.1
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 84.6
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 84.6
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 84.6
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 84.0
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 84.6
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 84.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 6.9e-91 337.4 186 82.3
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.5
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 82.4
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 82.4
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 83.0
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 83.5
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 84.0
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 2.0e-90 335.9 188 83.5
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 84.6
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 3.4e-90 335.1 186 81.7
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.0
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.9e-90 334.3 190 84.2
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.9e-90 334.3 190 84.2
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 83.5
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 82.4
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 81.9
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.0e-89 333.6 169 94.7
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 83.5
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 84.0
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.8e-89 331.6 186 81.2
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.8e-89 331.6 186 81.2
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 82.4
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 82.4
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 81.9
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 81.9
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 83.0
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.2e-88 328.6 186 80.6
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 81.9
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 81.4
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 81.4
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 81.4
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.9
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.9
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 81.4
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 80.9
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.1e-87 325.9 179 83.8
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 81.9
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 82.4
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.9
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 80.3
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 5.2e-86 321.2 180 83.3
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 80.3
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.1e-85 320.1 188 80.9
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 80.3
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 80.9
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.3
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.3
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.3
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 80.9
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 80.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 80.9
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 80.3
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.7
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 77.1
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 77.1
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 80.3
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 76.6
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 79.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 77.7
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 78.8
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 76.6
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.1
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.0e-81 307.0 188 75.5
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-81 306.6 174 82.2
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 3.8e-81 305.1 188 76.6
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 6.5e-81 304.3 189 78.3
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-80 303.5 180 76.7
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 77.7
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 5.5e-80 301.2 188 75.5
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 76.7
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 77.7
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 77.8
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.3e-78 295.8 190 74.7
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 2.3e-78 295.8 189 76.2
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 3.0e-78 295.4 190 74.7
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 5.7e-77 291.2 189 76.2
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 7.5e-77 290.8 188 74.5
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.0e-73 280.4 187 70.1
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.3e-73 280.0 188 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.7e-73 279.6 188 68.6
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.2e-73 279.3 188 71.3
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 2.2e-73 279.3 181 76.2
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.9e-72 276.2 187 69.5
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 4.2e-72 275.0 188 70.2
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 4.2e-72 275.0 188 70.2
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 7.2e-72 274.2 179 73.2
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 9.4e-72 273.9 179 72.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.6e-71 273.1 188 68.1
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 6.1e-71 271.2 177 74.6
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 8.0e-71 270.8 189 68.3
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 4.0e-70 268.5 188 70.7
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 4.8e-68 261.5 188 69.1
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.4e-67 260.0 187 65.8
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 9.5e-64 247.3 188 60.6
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.8e-59 233.0 177 63.3
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.0e-57 227.3 165 69.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.6e-55 219.9 188 60.1
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 2.3e-54 216.1 121 85.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 5.0e-49 198.4 187 50.8
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 4.3e-48 195.3 109 87.2
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-44 183.7 173 57.2
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.1e-43 180.6 115 75.7
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.2e-43 179.1 188 52.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 7.3e-40 167.9 123 69.9
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 5.8e-37 158.3 127 59.1
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.9e-36 155.2 85 85.9
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.5e-32 143.7 78 84.6
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 2.1e-26 123.2 64 87.5
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 8.6e-25 117.9 92 66.3
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.2e-10 70.9 35 91.4
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.6e-07 60.5 39 71.8


User provided reference genes

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