Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.9e-240 834.3 408 100.0
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 7.7e-236 820.1 408 97.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 8.5e-235 816.6 408 97.1
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 7.2e-234 813.5 408 96.6
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 1.5e-228 795.8 408 94.1
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 5.9e-228 793.9 408 94.1
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.0e-227 793.1 408 94.1
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 5.0e-227 790.8 406 94.1
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 7.2e-226 786.9 409 93.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.6e-225 784.6 408 93.4
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 6.7e-224 780.4 408 92.6
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.3e-222 776.2 408 91.9
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 2.8e-222 775.0 408 91.9
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-221 773.1 406 91.9
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.4e-221 772.7 408 91.4
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 5.3e-221 770.8 408 90.2
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 5.3e-221 770.8 409 91.2
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 9.1e-221 770.0 408 90.2
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.2e-220 769.6 408 90.9
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.6e-220 769.2 406 91.4
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.6e-220 768.5 406 90.6
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.6e-220 768.5 408 91.2
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.5e-220 767.7 408 90.4
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 4.5e-220 767.7 406 89.9
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 5.9e-220 767.3 408 90.7
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 5.9e-220 767.3 407 89.2
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 7.7e-220 766.9 406 89.7
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.3e-219 766.1 408 90.0
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.2e-219 765.4 408 90.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.9e-219 765.0 398 93.2
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 2.9e-219 765.0 408 90.2
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 2.9e-219 765.0 408 90.0
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 5.0e-219 764.2 406 90.4
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.1e-218 763.1 408 90.0
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 89.2
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.5e-218 761.9 408 89.7
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 3.2e-218 761.5 407 89.9
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 7.2e-218 760.4 406 88.4
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 9.4e-218 760.0 408 89.5
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 9.4e-218 760.0 408 89.0
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 89.2
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.1e-217 758.8 406 88.4
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.6e-217 758.1 406 89.7
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 6.1e-217 757.3 406 89.2
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 6.1e-217 757.3 406 88.2
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 88.9
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 89.2
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.0e-216 756.5 406 89.9
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.0e-216 756.5 406 88.9
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 88.7
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 88.2
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 88.9
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 89.2
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 4.0e-216 754.6 408 88.0
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 4.0e-216 754.6 409 89.7
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.2e-216 754.2 406 88.9
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 6.7e-216 753.8 406 88.2
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.5e-215 752.7 408 89.7
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.5e-215 752.7 409 88.8
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.3e-215 751.5 405 88.6
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 5.7e-215 750.7 404 88.4
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 5.7e-215 750.7 422 87.0
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.7e-214 749.2 406 86.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 8.2e-214 746.9 406 87.7
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.8e-213 745.7 450 81.8
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.8e-213 745.7 406 87.7
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 88.0
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 87.0
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 87.0
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 5.3e-213 744.2 409 87.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 87.3
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 87.5
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.2e-212 743.0 406 86.5
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.6e-212 742.7 409 87.3
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.7e-212 741.9 409 87.8
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 2.7e-212 741.9 408 87.0
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.7e-212 741.9 406 86.5
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.7e-212 741.9 406 87.9
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 87.4
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 7.7e-212 740.3 409 86.8
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 1.0e-211 740.0 407 87.2
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.3e-211 739.6 421 85.3
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.7e-211 739.2 409 86.6
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 2.9e-211 738.4 409 86.8
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.8e-211 738.0 409 87.0
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 8.5e-211 736.9 410 86.8
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 8.5e-211 736.9 407 85.7
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.1e-210 736.5 410 87.1
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-210 736.5 407 85.7
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.5e-210 734.2 408 85.0
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 9.4e-210 733.4 406 86.2
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-209 732.6 410 86.3
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.6e-209 732.6 410 86.3
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.6e-209 732.6 410 86.6
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.7e-209 731.9 452 80.3
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.7e-209 731.9 406 85.0
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 3.6e-209 731.5 409 85.1
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 6.1e-209 730.7 473 77.4
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.3e-208 728.8 406 84.5
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 2.3e-208 728.8 433 82.0
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 3.0e-208 728.4 408 85.3
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.5e-207 726.1 406 85.7
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.4e-207 724.9 409 84.8
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 3.4e-207 724.9 408 85.8
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.7e-206 722.6 408 84.1
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.8e-206 721.8 383 90.9
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.7e-206 721.5 406 84.7
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 6.3e-206 720.7 408 83.8
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.8e-205 719.2 379 91.0
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.1e-205 718.4 407 83.5
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.2e-204 716.5 407 83.0
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.9e-202 709.1 387 87.3
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 3.6e-201 704.9 517 69.8
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 5.2e-200 701.0 449 75.9
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.5e-199 699.5 382 87.7
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 3.4e-199 698.4 410 81.7
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 4.1e-197 691.4 410 82.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.5e-194 682.9 417 80.1
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.9e-194 682.6 358 91.3
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.0e-192 676.8 356 90.2
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 3.4e-191 671.8 388 81.4
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 6.4e-190 667.5 358 89.1
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.0e-188 662.5 409 76.0
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 3.5e-188 661.8 379 81.8
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 5.6e-186 654.4 408 78.4
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 7.3e-178 627.5 406 74.4
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 3.1e-176 622.1 410 72.7
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 8.9e-176 620.5 412 72.3
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 3.9e-171 605.1 380 73.4
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.1e-168 595.5 317 89.0
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 7.1e-165 584.3 400 69.5
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 8.4e-158 560.8 388 72.9
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 3.0e-155 552.4 409 69.4
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.2e-149 532.3 282 89.4
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 2.4e-144 516.2 400 62.2
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.1e-144 515.8 310 82.3
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 6.7e-131 471.5 245 91.8
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 9.0e-128 461.1 368 61.7
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.3e-123 446.4 255 83.9
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 9.7e-122 441.0 385 57.7
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.5e-119 433.7 238 88.7
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.4e-117 427.2 227 89.9
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 8.8e-107 391.3 239 79.5
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 5.5e-101 372.1 197 89.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.8e-80 303.9 422 41.2
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.7e-73 280.8 183 74.9
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 4.9e-73 279.3 390 42.6
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 2.5e-69 266.9 180 71.7
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 5.8e-58 229.2 141 76.6
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 9.9e-58 228.4 140 77.1
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-56 223.8 124 84.7
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.9e-49 199.5 130 76.9
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.5e-21 108.2 128 49.2
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.2e-20 102.4 58 77.6
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 6.9e-11 72.8 333 23.1
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 8.5e-09 65.9 336 21.1


User provided reference genes

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