Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 0.0e+00 1273.8 657 100.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 0.0e+00 1157.5 655 89.0
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 0.0e+00 1109.7 655 86.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 0.0e+00 1107.4 656 87.0
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.3e-301 1039.3 656 77.4
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 3.8e-293 1011.1 655 75.7
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 4.2e-292 1007.7 655 76.5
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 6.0e-291 1003.8 656 78.5
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 7.4e-289 996.9 656 77.9
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 1.5e-281 972.6 665 73.5
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 6.9e-279 963.8 655 75.9
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 4.2e-276 954.5 656 75.6
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 3.5e-254 881.7 657 67.3
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 2.5e-252 875.5 657 66.4
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 4.0e-250 868.2 654 66.1
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 3.3e-249 865.1 659 64.5
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.3e-248 863.2 658 65.7
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 5.3e-247 857.8 657 63.2
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 5.3e-247 857.8 653 66.3
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 7.0e-247 857.4 659 65.4
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 1.0e-245 853.6 655 65.8
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.8e-245 851.7 657 64.1
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 8.5e-245 850.5 660 64.2
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 8.5e-245 850.5 656 64.2
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 1.9e-244 849.4 657 63.8
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 7.2e-244 847.4 656 66.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 2.1e-243 845.9 653 65.8
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 3.6e-243 845.1 660 63.6
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 9.8e-241 837.0 655 64.4
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 4.1e-239 831.6 655 64.0
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.0e-238 829.3 658 64.3
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.5e-238 828.2 658 63.1
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.0e-237 827.0 658 64.3
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 6.5e-237 824.3 646 63.8
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.5e-236 823.2 656 63.0
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 9.5e-236 820.5 658 62.9
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 4.7e-235 818.1 658 62.9
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 2.6e-233 812.4 655 62.3
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 4.9e-232 808.1 658 60.3
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 7.8e-230 800.8 658 62.0
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 3.8e-229 798.5 657 61.9
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 6.6e-229 797.7 660 61.1
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 6.6e-229 797.7 648 61.3
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 3.3e-228 795.4 655 61.4
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 2.1e-227 792.7 657 58.4
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 4.4e-225 785.0 659 60.4
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.7e-224 783.1 659 61.3
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 7.8e-222 774.2 658 59.7
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 1.0e-221 773.9 667 59.5
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.7e-221 773.1 679 57.7
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 3.9e-221 771.9 658 58.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 5.0e-221 771.5 658 58.7
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.5e-220 770.0 658 58.5
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 3.3e-220 768.8 658 60.2
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 3.3e-220 768.8 658 58.4
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 3.1e-218 762.3 660 58.5
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 5.2e-218 761.5 660 58.5
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 3.4e-217 758.8 645 59.7
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 9.8e-217 757.3 662 59.1
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.7e-216 756.5 662 58.3
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.1e-215 753.8 656 57.2
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.5e-214 748.8 649 58.4
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 6.0e-214 748.0 647 57.7
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 5.0e-213 745.0 647 58.7
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.1e-212 743.8 641 59.3
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.5e-212 743.4 656 57.3
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 5.6e-212 741.5 652 59.2
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 2.1e-211 739.6 662 56.3
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 6.2e-211 738.0 660 56.5
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 1.1e-210 737.3 650 57.1
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 6.8e-210 734.6 630 58.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 2.0e-209 733.0 652 57.7
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.6e-209 732.6 652 57.7
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 9.8e-209 730.7 652 57.5
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 9.8e-209 730.7 653 57.7
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 6.4e-208 728.0 664 56.2
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 7.1e-207 724.5 652 56.1
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 2.1e-206 723.0 654 57.8
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 6.0e-206 721.5 658 54.7
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.5e-204 716.1 654 56.4
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.5e-204 716.1 654 56.4
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 6.2e-203 711.4 655 55.7
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.2e-200 703.0 652 55.5
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.2e-199 699.1 650 53.7
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 7.1e-199 698.0 662 54.1
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 6.0e-198 694.9 656 55.8
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 6.0e-198 694.9 651 57.8
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 4.0e-194 682.2 653 55.1
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 9.0e-194 681.0 513 66.9
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 8.4e-192 674.5 649 51.5
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 8.4e-192 674.5 661 51.7
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.2e-190 670.6 651 53.0
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 7.3e-188 661.4 654 55.2
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 2.2e-184 649.8 659 52.5
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 3.8e-184 649.0 683 50.1
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.0e-181 641.0 664 51.5
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.3e-181 640.6 660 52.6
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 9.6e-172 607.8 659 48.3
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.8e-171 606.3 490 61.6
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.5e-140 504.2 417 61.9
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 2.9e-136 490.0 523 49.3
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 7.7e-129 465.3 361 66.5
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 4.0e-125 453.0 624 44.1
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.7e-123 447.6 483 49.5
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 2.0e-121 440.7 369 61.2
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 2.9e-120 436.8 669 38.9
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.6e-105 387.9 657 35.8
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 4.6e-97 359.8 673 35.1
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.3e-91 341.7 510 40.2
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 9.2e-90 335.5 361 49.0
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 8.6e-88 328.9 269 56.9
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 5.8e-84 316.2 279 53.0
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 2.1e-78 297.7 758 29.2
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 5.3e-61 240.0 262 47.3
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.2e-60 238.8 714 27.3
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 9.9e-60 235.7 350 37.4
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 9.6e-55 219.2 273 44.3
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 4.8e-46 190.3 223 48.4
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.7e-30 138.7 130 59.2
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 5.3e-29 133.7 81 72.8
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 5.3e-29 133.7 233 32.6
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.6e-23 114.8 101 49.5
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.1e-21 107.8 86 51.2
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 9.1e-21 106.3 73 63.0
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.6e-20 105.5 209 29.7
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.9e-19 101.3 73 61.6
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 6.5e-19 100.1 65 76.9
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.5e-18 99.0 73 60.3
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.7e-17 94.7 254 29.9
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.0e-16 92.8 158 36.7
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 6.7e-16 90.1 245 26.9
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 6.3e-14 83.6 90 51.1
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.1e-10 72.8 95 41.1
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 2.5e-10 71.6 100 40.0
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 3.6e-09 67.8 54 61.1
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 2.3e-08 65.1 41 82.9
Dinv21729 Davidia involucrata HOM05D005402 ORTHO05D007036 2.2e-06 58.5 65 50.8


User provided reference genes

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