Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 0.0e+00 2347.8 1424 100.0
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 0.0e+00 2009.2 1429 85.5
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1741.9 1445 78.1
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1729.5 1450 77.0
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 0.0e+00 1493.0 1450 66.5
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 1458.4 1493 66.4
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 0.0e+00 1456.4 1489 65.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 0.0e+00 1428.3 1452 64.3
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 0.0e+00 1385.2 1464 63.7
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 1332.0 1652 58.0
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 0.0e+00 1233.4 1532 57.4
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 0.0e+00 1203.7 1412 58.2
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1134.0 1482 54.3
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1099.7 1495 53.7
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1083.6 1477 53.9
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 8.1e-309 1064.3 1557 52.5
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 4.9e-306 1055.0 1458 53.7
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.4e-305 1053.5 1461 54.1
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 2.5e-305 1052.7 1484 52.4
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 5.5e-305 1051.6 1452 53.4
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 7.1e-305 1051.2 1453 53.8
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.0e-303 1047.3 1465 50.3
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 2.8e-301 1039.3 1435 53.0
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.5e-299 1033.5 1468 52.2
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 1.7e-298 1030.0 1515 50.7
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.0e-295 1020.8 1511 50.1
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 1.8e-295 1020.0 1403 55.3
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 1.9e-294 1016.5 1459 51.1
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 2.5e-294 1016.1 1465 50.8
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.5e-294 1016.1 1477 52.2
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 2.3e-287 993.0 1432 50.2
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 4.3e-286 988.8 1545 48.9
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 5.7e-286 988.4 1453 50.2
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 4.8e-285 985.3 1427 49.7
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.1e-284 984.2 1534 48.7
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.2e-283 980.7 1575 48.1
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 5.0e-282 975.3 1474 51.8
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.7e-277 960.3 1491 50.8
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 1.0e-274 951.0 1485 48.9
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.2e-273 946.0 1542 46.4
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 5.5e-273 945.3 1497 47.0
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 9.4e-273 944.5 1500 47.2
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.6e-267 927.2 1523 47.7
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 7.7e-267 924.9 1437 49.8
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 4.0e-263 912.5 1472 46.7
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 5.2e-263 912.1 1491 48.2
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 6.8e-263 911.8 1493 48.2
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.5e-259 899.4 1487 47.2
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.2e-258 896.7 1454 47.2
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.0e-255 887.9 1470 45.8
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.5e-254 884.0 1450 46.3
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 2.2e-253 880.2 1484 45.2
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 1.8e-252 877.1 1431 46.5
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 7.3e-249 865.1 1413 47.1
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 2.8e-248 863.2 1478 47.2
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.7e-245 852.8 1553 43.1
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 5.8e-238 828.9 1434 44.4
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 5.8e-238 828.9 1538 42.8
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.2e-237 827.0 1299 48.8
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 7.0e-236 822.0 1477 45.0
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 3.5e-235 819.7 1492 43.1
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.1e-233 814.7 1400 45.0
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 2.6e-230 803.5 1505 43.2
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 2.1e-227 793.9 1470 44.1
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 8.6e-226 788.5 1496 43.5
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 8.6e-226 788.5 1519 41.5
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 7.3e-225 785.4 1432 44.4
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.0e-222 777.3 1422 43.9
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.3e-221 774.6 724 62.2
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 1.3e-221 774.6 1447 45.2
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 3.5e-219 766.5 1253 49.2
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 1.5e-214 751.1 1449 46.2
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 7.6e-214 748.8 1486 42.1
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.7e-213 747.7 1537 40.5
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 8.4e-213 745.3 1442 43.2
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.9e-212 744.2 1491 41.9
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.6e-211 741.1 1522 40.5
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 5.6e-209 732.6 1451 42.6
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 2.1e-208 730.7 1501 40.8
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 4.0e-207 726.5 1474 41.2
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 6.4e-205 719.2 1494 43.5
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 1.1e-199 701.8 1472 40.8
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 1.1e-199 701.8 1472 40.8
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 3.1e-199 700.3 1475 41.2
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.3e-197 694.9 1477 41.2
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 2.2e-197 694.1 1476 40.9
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 3.8e-197 693.3 1272 43.1
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 4.6e-195 686.4 1487 39.9
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 7.9e-195 685.6 1421 40.3
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 5.6e-193 679.5 1479 41.5
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.2e-190 671.8 1403 40.9
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 9.3e-188 662.1 1409 44.0
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 7.2e-180 636.0 1452 39.8
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.2e-176 624.4 1478 37.8
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.9e-164 584.7 1042 41.6
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 7.4e-161 572.8 1338 40.7
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 5.0e-149 533.5 1235 36.1
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.5e-148 531.9 1506 35.3
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.2e-146 523.5 580 59.8
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 6.8e-146 523.1 1366 34.8
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 7.2e-140 503.1 1236 38.0
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.2e-139 502.3 1294 35.6
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 7.5e-129 466.5 787 43.7
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 2.7e-126 458.0 1475 35.3
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 4.1e-119 434.1 1312 32.8
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.4e-106 391.7 704 42.0
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 4.8e-91 340.9 1507 31.5
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 9.7e-68 263.5 852 37.3
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.6e-67 262.7 1384 26.2
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.1e-63 250.0 407 50.6
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.0e-61 241.9 727 33.6
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 3.1e-58 231.9 666 33.5
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 9.1e-58 230.3 1478 25.8
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 2.1e-54 219.2 331 38.1
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 6.1e-54 217.6 1196 27.8
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 3.7e-43 181.8 263 47.5
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 4.8e-43 181.4 386 42.0
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 7.0e-34 151.0 171 46.8
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 3.5e-33 148.7 293 39.9
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.7e-32 146.4 327 38.2
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 2.9e-32 145.6 249 51.0
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 1.4e-29 136.7 130 61.5
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.4e-29 136.7 92 68.5
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 3.5e-25 122.1 64 92.2
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.8e-24 118.6 279 41.6
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 3.3e-23 115.5 124 50.8
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 1.6e-22 113.2 246 39.0
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 6.8e-21 107.8 65 72.3
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 7.0e-18 97.8 294 35.4
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 2.9e-16 92.4 62 66.1
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.9e-16 92.4 69 59.4
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 8.6e-16 90.9 442 30.8
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-13 83.6 50 66.0
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 8.9e-13 80.9 269 34.6
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 1.5e-12 80.1 79 49.4
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 4.4e-12 78.6 76 51.3
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 7.5e-12 77.8 289 34.9
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 5.4e-10 71.6 57 59.6
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 6.0e-09 68.2 50 56.0
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 7.8e-09 67.8 108 36.1
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 7.8e-09 67.8 143 39.9
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.0e-08 67.4 89 46.1
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.6e-08 64.3 86 43.0
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 1.5e-07 63.5 134 36.6
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.6e-06 60.1 103 33.0
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 2.8e-06 59.3 306 20.6


User provided reference genes

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