Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 9.1e-167 590.1 289 100.0
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 2.6e-137 492.3 309 80.3
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.2e-129 466.8 309 74.8
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 2.6e-129 465.7 311 73.3
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 3.8e-128 461.8 311 72.3
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.0e-125 453.8 304 73.7
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.6e-123 446.4 312 70.5
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 3.8e-120 435.3 289 74.0
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 1.1e-116 423.7 304 67.4
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.9e-116 422.9 302 68.2
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.3e-116 422.2 302 68.2
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.1e-114 417.2 307 66.1
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 5.3e-114 414.8 308 67.9
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.9e-114 414.5 314 65.9
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.5e-113 413.3 314 65.6
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 5.8e-113 411.4 308 67.2
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 9.9e-113 410.6 335 60.6
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.2e-112 409.5 313 65.5
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 2.2e-112 409.5 315 65.1
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 7.1e-111 404.4 302 63.9
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 9.3e-111 404.1 303 62.4
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 6.0e-110 401.4 303 64.7
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.0e-109 400.6 298 65.4
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 1.8e-109 399.8 311 63.0
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 3.9e-109 398.7 304 61.8
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 8.7e-109 397.5 307 62.5
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 8.7e-109 397.5 304 61.8
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.9e-108 396.4 307 62.2
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 1.9e-108 396.4 314 61.5
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 3.7e-107 392.1 304 61.2
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 4.8e-107 391.7 317 60.6
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 1.1e-106 390.6 310 60.6
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 2.4e-106 389.4 305 62.6
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.1e-106 389.0 298 64.1
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.1e-106 389.0 298 64.1
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.1e-106 389.0 298 64.1
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.1e-106 389.0 298 64.1
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 6.9e-106 387.9 302 62.3
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 6.9e-106 387.9 300 63.7
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.0e-105 386.3 305 59.3
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 2.9e-104 382.5 312 60.3
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 1.4e-103 380.2 298 62.8
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 2.5e-103 379.4 298 62.8
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 2.5e-103 379.4 303 59.4
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 3.2e-103 379.0 292 62.3
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 5.5e-103 378.3 310 58.1
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 1.2e-102 377.1 309 59.2
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.6e-102 376.7 295 61.7
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 2.1e-102 376.3 298 62.8
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.6e-102 375.2 305 57.4
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.6e-102 375.2 305 57.4
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 6.0e-102 374.8 302 58.9
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.0e-101 374.0 314 57.6
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 3.9e-101 372.1 331 58.0
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.7e-101 371.3 305 56.7
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.1e-100 370.5 300 59.3
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.1e-100 370.5 302 58.3
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.1e-100 370.5 303 58.4
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 3.3e-100 369.0 303 58.1
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 4.3e-100 368.6 298 62.1
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 5.6e-100 368.2 333 57.7
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 5.6e-100 368.2 333 57.7
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 5.6e-100 368.2 285 61.4
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 5.6e-100 368.2 304 58.9
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 4.8e-99 365.2 305 59.0
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 9.0e-98 360.9 290 61.4
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 2.0e-97 359.8 303 57.4
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.0e-96 357.5 292 60.3
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 2.9e-96 355.9 276 61.2
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.8e-96 355.5 302 56.3
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.4e-95 353.6 315 57.8
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 7.1e-95 351.3 288 59.4
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.7e-94 349.4 285 57.9
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.8e-93 346.7 285 57.9
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 3.3e-92 342.4 308 56.5
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.3e-91 340.5 381 47.5
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.4e-90 337.0 292 56.2
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 2.9e-88 329.3 299 54.2
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.4e-85 320.5 240 64.2
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.7e-83 313.5 314 52.2
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 6.9e-82 308.1 301 53.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 6.5e-80 301.6 243 58.8
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 7.9e-78 294.7 321 49.5
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 9.7e-76 287.7 257 56.4
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 2.4e-74 283.1 283 51.9
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 4.1e-74 282.3 209 66.0
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 3.5e-73 279.3 245 58.8
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.0e-72 277.7 310 49.0
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 3.8e-72 275.8 286 52.8
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 1.9e-71 273.5 271 52.8
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 2.5e-71 273.1 220 60.0
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.8e-69 266.9 259 52.5
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.5e-68 263.8 299 47.5
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.2e-63 245.7 190 62.6
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.7e-62 243.0 189 61.9
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 4.7e-62 242.3 219 57.1
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 6.1e-62 241.9 296 44.9
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 6.3e-59 231.9 186 61.8
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.1e-58 229.2 185 56.2
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.3e-58 228.8 186 55.4
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-57 227.3 185 55.1
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.5e-57 226.1 185 55.7
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.5e-57 225.7 187 54.0
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.9e-57 225.3 185 55.1
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 7.7e-57 224.9 207 51.7
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 2.5e-55 219.9 244 48.8
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 3.2e-55 219.5 189 57.1
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 4.4e-52 209.1 229 48.0
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.5e-49 199.5 185 51.4
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.8e-45 185.3 186 47.8
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.4e-42 177.6 186 47.8
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.3e-40 170.2 290 39.7
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 3.3e-39 166.4 303 36.0
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.3e-39 166.0 101 71.3
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.2e-36 157.9 189 45.0
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 7.5e-36 155.2 183 44.8
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.0e-34 148.7 116 57.8
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.6e-33 147.5 83 79.5
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.6e-33 147.5 83 79.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 6.0e-33 145.6 120 60.0
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 7.8e-33 145.2 98 67.3
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.3e-32 143.7 116 56.0
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.3e-31 139.4 108 59.3
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 3.4e-28 129.8 271 33.2
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.3e-27 127.9 110 57.3
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 1.0e-24 118.2 77 76.6
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 1.0e-24 118.2 77 76.6
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 4.3e-23 112.8 291 30.2
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 7.3e-23 112.1 65 72.3
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 2.6e-12 77.0 45 71.1
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 3.0e-08 63.5 122 40.2
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.6e-06 56.6 39 61.5


User provided reference genes

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