Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 9.5e-292 1006.5 673 100.0
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 3.8e-272 941.4 670 91.3
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.3e-259 899.8 668 84.9
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.3e-251 873.2 670 89.0
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 4.8e-243 844.7 650 87.5
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.2e-241 840.1 661 83.1
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 2.2e-240 835.9 657 87.1
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 9.7e-236 820.5 651 82.8
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.4e-234 815.8 662 86.0
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 5.3e-234 814.7 661 80.8
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 2.0e-228 796.2 656 84.6
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 3.2e-223 778.9 682 81.4
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 4.1e-218 761.9 660 78.0
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 5.2e-213 745.0 658 79.2
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 9.1e-210 734.2 657 77.5
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.7e-209 732.6 647 80.1
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.5e-207 726.1 628 80.6
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.6e-206 723.4 656 76.5
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.1e-206 723.0 646 78.0
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 8.8e-205 717.6 645 75.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.6e-204 716.1 658 76.6
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 9.8e-204 714.1 663 73.5
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 9.8e-204 714.1 656 74.1
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.7e-203 713.4 661 76.2
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.2e-203 713.0 663 73.3
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.8e-203 712.6 661 72.3
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 3.7e-203 712.2 652 74.2
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.1e-202 708.8 662 69.9
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 5.4e-202 708.4 654 75.1
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.0e-202 708.0 662 75.8
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.2e-201 707.2 661 75.9
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 2.7e-201 706.1 694 67.3
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 7.7e-201 704.5 660 74.8
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.3e-200 703.0 663 66.2
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 6.6e-200 701.4 661 76.6
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.5e-199 700.3 648 75.0
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.2e-198 697.2 657 74.0
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 2.8e-198 696.0 652 71.5
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.0e-197 694.1 665 75.6
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 3.0e-197 692.6 672 72.5
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.2e-196 690.6 641 73.5
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 2.6e-196 689.5 651 76.0
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 3.4e-196 689.1 648 79.5
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.7e-195 686.8 645 73.2
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 3.7e-195 685.6 650 77.2
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.4e-194 682.9 656 76.7
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 7.0e-194 681.4 656 76.5
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 9.2e-194 681.0 652 74.4
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 9.2e-194 681.0 671 76.2
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.6e-193 680.2 653 74.0
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 4.6e-193 678.7 656 76.4
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 5.9e-193 678.3 652 72.4
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 7.8e-193 677.9 647 73.0
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 7.8e-193 677.9 647 73.0
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 7.8e-193 677.9 647 73.0
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.3e-192 677.2 648 73.3
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.7e-192 676.8 652 75.3
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 2.9e-192 676.0 647 73.0
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 2.9e-192 676.0 647 73.0
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 3.9e-192 675.6 652 75.2
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 1.5e-191 673.7 641 76.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 2.5e-191 672.9 647 72.6
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.3e-191 672.5 647 72.6
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 9.5e-191 671.0 659 71.9
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.8e-190 669.5 647 72.8
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 3.6e-190 669.1 654 71.3
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 8.0e-190 667.9 570 73.5
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.3e-189 666.4 654 73.9
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 2.3e-189 666.4 659 70.4
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 3.1e-189 666.0 638 72.9
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 8.9e-189 664.5 642 72.7
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 8.9e-189 664.5 647 72.3
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.2e-188 664.1 658 71.1
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.0e-188 663.3 648 72.1
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.4e-188 662.5 642 72.6
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 4.4e-188 662.1 645 71.9
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 7.5e-188 661.4 646 72.1
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 7.5e-188 661.4 661 75.0
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.2e-187 659.8 643 71.5
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 8.3e-187 657.9 668 68.7
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 4.1e-186 655.6 633 74.6
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.2e-185 654.1 679 72.6
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 2.0e-185 653.3 648 71.5
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 4.6e-185 652.1 632 69.1
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 6.0e-185 651.7 664 71.7
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.0e-184 651.0 646 70.9
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 5.0e-184 648.7 664 72.0
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.2e-182 644.0 660 70.5
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.8e-182 642.9 654 74.0
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 8.1e-182 641.3 657 74.1
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 3.1e-181 639.4 660 70.0
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 4.0e-181 639.0 656 70.4
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 4.0e-181 639.0 654 73.5
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.2e-180 637.5 546 78.2
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 1.5e-180 637.1 634 68.3
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.9e-179 632.9 669 63.1
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 3.2e-178 629.4 645 72.7
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.1e-177 626.7 557 74.0
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.1e-177 626.7 605 72.9
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 3.9e-176 622.5 580 78.1
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-175 620.9 689 65.2
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.8e-173 613.6 643 62.5
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.8e-172 608.6 647 58.6
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 4.6e-169 599.0 635 67.4
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.5e-167 593.2 640 63.9
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.3e-167 592.8 639 66.0
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 5.6e-167 592.0 536 83.0
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.5e-164 583.9 646 67.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.4e-164 582.8 562 75.1
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 8.7e-160 568.2 618 69.6
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 1.3e-150 537.7 509 75.4
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.1e-149 534.6 654 68.3
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.3e-147 527.7 590 62.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 2.1e-137 493.8 668 53.3
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 3.9e-136 489.6 709 61.2
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 2.8e-134 483.4 510 73.1
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 7.6e-132 475.3 612 54.4
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-130 471.5 504 71.6
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.6e-129 467.6 502 71.5
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.9e-128 463.0 624 53.5
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 5.1e-128 462.6 507 62.7
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.3e-118 429.1 619 51.1
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.0e-105 385.6 255 74.1
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 5.7e-103 379.4 497 56.3
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.7e-99 367.9 320 73.8
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 6.5e-99 365.9 285 68.4
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 3.6e-97 360.1 276 68.5
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.3e-96 357.5 454 46.3
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.5e-90 338.2 476 62.8
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.0e-88 330.5 223 86.1
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 6.8e-88 329.3 376 69.7
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.6e-84 318.2 476 56.5
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 5.4e-77 293.1 285 56.8
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 4.4e-71 273.5 284 85.6
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 9.2e-69 265.8 260 57.3
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.2e-68 265.4 174 74.1
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 4.7e-65 253.4 242 52.1
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 4.7e-65 253.4 319 69.6
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 2.2e-62 244.6 216 80.1
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 2.0e-55 221.5 138 77.5
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-52 211.8 279 45.9
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 8.6e-51 206.1 280 45.7
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 8.9e-48 196.1 111 85.6
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 1.4e-45 188.7 111 82.9
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.4e-45 188.0 207 51.7
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.2e-44 185.7 289 76.1
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.1e-40 172.6 84 94.0
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 2.6e-39 167.9 167 55.1
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.9e-30 137.9 164 52.4
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-30 137.1 323 52.0
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.2e-29 134.0 102 66.7
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.5e-29 133.7 111 64.0
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.7e-28 131.3 102 66.7
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 3.5e-28 131.0 131 48.1
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.0e-27 129.4 95 67.4
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 6.0e-20 103.6 535 30.3
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 4.3e-18 97.4 69 66.7
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 1.3e-17 95.9 56 78.6
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 3.7e-17 94.4 171 38.6
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.9e-15 87.0 68 63.2
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 6.5e-14 83.6 524 28.1
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 2.5e-13 81.6 190 27.4
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 5.5e-13 80.5 169 33.1
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 9.3e-13 79.7 68 54.4
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 3.6e-12 77.8 68 52.9
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 3.3e-10 71.2 63 52.4
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 3.3e-10 71.2 64 51.6
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 9.7e-10 69.7 54 59.3
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.6e-09 68.9 145 36.6
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 4.1e-08 64.3 122 37.7
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 1.0e-06 59.7 44 59.1
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 5.0e-06 57.4 54 48.1
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 6.5e-06 57.0 56 55.4


User provided reference genes

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