Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 4.0e-184 647.9 311 100.0
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 3.3e-114 415.6 308 68.5
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 8.2e-113 411.0 311 65.9
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 5.0e-110 401.7 311 63.3
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.9e-109 399.8 315 63.8
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.8e-104 383.3 311 61.4
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 1.3e-102 377.1 310 60.6
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 3.2e-101 372.5 305 57.4
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 5.5e-101 371.7 309 57.9
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.0e-99 367.5 309 57.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 6.7e-99 364.8 317 59.3
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 6.7e-99 364.8 308 57.1
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.7e-97 360.1 305 57.0
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.8e-97 358.6 304 58.6
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.8e-96 356.7 307 57.0
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.0e-94 350.9 304 57.6
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 9.4e-93 344.4 304 57.6
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 9.4e-93 344.4 305 54.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 4.7e-92 342.0 306 53.3
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.1e-90 337.4 305 53.4
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.1e-90 337.4 305 52.8
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.4e-90 335.5 309 53.4
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 2.8e-89 332.8 307 52.4
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 6.3e-89 331.6 307 51.8
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.4e-88 329.7 308 50.6
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 7.0e-88 328.2 327 50.2
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.2e-87 327.4 307 53.1
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 2.9e-86 322.8 306 52.0
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 8.5e-86 321.2 307 49.8
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.6e-84 317.0 314 54.1
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 3.6e-84 315.8 307 49.5
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 2.3e-83 313.2 297 53.5
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 4.0e-83 312.4 306 50.3
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.5e-82 310.5 310 51.6
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.0e-82 310.1 313 51.1
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 9.7e-82 307.8 310 51.3
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 3.7e-81 305.8 313 50.5
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 3.7e-81 305.8 306 49.3
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 6.3e-81 305.1 312 52.6
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 8.3e-81 304.7 313 50.2
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.1e-80 304.3 307 50.5
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.0e-79 300.1 307 51.1
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.0e-79 300.1 306 48.4
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.0e-79 300.1 306 48.4
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.3e-78 297.4 307 48.2
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 2.2e-78 296.6 304 47.4
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.5e-77 293.9 308 47.4
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 9.4e-77 291.2 267 54.7
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 9.4e-77 291.2 308 48.1
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.2e-76 290.8 304 47.7
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.2e-76 290.8 294 49.7
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 2.7e-76 289.7 308 49.0
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 8.0e-76 288.1 303 47.2
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.4e-75 287.3 306 45.4
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.2e-74 284.3 305 47.5
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 4.4e-74 282.3 291 54.6
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 1.3e-73 280.8 307 45.6
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.3e-73 280.8 298 48.7
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 1.7e-73 280.4 305 46.9
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.7e-73 280.4 310 47.7
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 6.3e-73 278.5 311 49.2
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 6.3e-73 278.5 305 46.6
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.1e-72 277.7 309 47.2
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 4.1e-72 275.8 291 49.1
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 5.4e-72 275.4 302 45.7
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 8.6e-70 268.1 333 42.3
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 3.3e-69 266.2 308 45.5
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 9.5e-69 264.6 321 47.7
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.6e-68 263.8 306 45.1
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 4.7e-68 262.3 310 46.8
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.1e-68 261.9 310 46.8
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 8.0e-68 261.5 310 46.8
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.2e-66 257.7 310 42.9
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.6e-63 247.3 311 43.7
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.6e-63 247.3 311 43.7
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 4.6e-63 245.7 308 41.9
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 1.7e-62 243.8 307 40.7
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.3e-62 243.4 314 43.3
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.5e-61 240.7 260 49.6
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.3e-61 239.6 268 45.9
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.5e-58 230.7 304 37.8
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 4.4e-58 229.2 309 39.2
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.4e-58 229.2 309 39.2
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 7.5e-58 228.4 314 42.0
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.7e-57 226.1 309 38.8
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.9e-57 225.7 309 38.8
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.1e-56 224.6 308 42.2
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.4e-56 224.2 305 40.0
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 1.9e-56 223.8 308 42.5
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.2e-55 221.1 263 45.6
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.0e-54 216.5 310 38.1
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.6e-54 214.9 310 38.1
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.9e-53 213.8 307 41.0
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.5e-53 213.4 308 39.6
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.3e-53 213.0 311 39.9
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 9.5e-53 211.5 322 36.3
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.2e-52 211.1 228 49.6
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.8e-52 209.9 307 39.7
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.8e-52 209.9 303 38.9
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.4e-51 207.6 306 39.5
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 2.3e-51 206.8 305 39.0
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.3e-51 206.8 305 40.0
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.8e-51 205.3 308 42.5
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 8.9e-51 204.9 308 36.0
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 7.5e-50 201.8 303 37.0
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 7.5e-50 201.8 306 39.5
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.2e-49 200.3 307 38.8
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.9e-49 199.9 305 38.7
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 6.4e-49 198.7 306 39.2
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 6.4e-49 198.7 305 39.3
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.1e-48 198.0 309 36.9
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.4e-48 197.6 308 38.6
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.9e-48 197.2 309 38.8
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 1.9e-48 197.2 307 40.1
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.4e-48 196.8 319 38.2
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.4e-48 196.8 319 38.2
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.2e-48 196.4 237 47.3
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.2e-48 196.4 310 36.8
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 5.4e-48 195.7 306 38.6
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 7.1e-48 195.3 309 36.6
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.2e-47 194.5 308 38.6
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.1e-47 193.7 307 39.7
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.3e-46 190.3 236 44.9
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 5.1e-46 189.1 334 34.4
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 1.1e-45 188.0 304 38.8
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 5.6e-45 185.7 235 42.6
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 3.1e-43 179.9 307 37.8
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 6.8e-43 178.7 307 36.2
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.2e-42 177.9 307 37.5
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 4.4e-42 176.0 330 36.4
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 7.6e-42 175.3 307 37.5
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 7.6e-42 175.3 307 37.5
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.3e-41 174.5 337 34.1
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 4.9e-41 172.6 307 36.5
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 2.4e-40 170.2 294 34.4
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 2.4e-40 170.2 140 58.6
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.2e-39 167.9 168 50.6
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 4.6e-39 166.0 203 46.8
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 2.5e-37 160.2 309 35.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.6e-37 159.1 296 34.8
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.1e-35 154.8 137 51.8
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.2e-34 151.4 303 32.7
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.0e-34 150.6 351 33.3
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 2.6e-34 150.2 163 46.0
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.7e-33 147.5 160 46.2
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.8e-33 146.4 167 43.1
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 5.3e-27 125.9 145 42.8
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.9e-24 117.5 206 37.4
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 4.6e-23 112.8 100 66.0
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 1.4e-19 101.3 100 62.0
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 6.4e-17 92.4 182 34.1
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.8e-14 84.3 124 35.5
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 1.1e-13 81.6 60 63.3
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.6e-13 79.3 115 40.9
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 3.8e-09 66.6 112 33.0
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 3.8e-09 66.6 57 56.1


User provided reference genes

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