Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G328704 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 0.0e+00 1532.7 787 100.0
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 0.0e+00 1435.2 738 99.9
VMungo0251G2737 Vigna mungo HOM05D002653 ORTHO05D002623 0.0e+00 1365.9 740 95.0
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 0.0e+00 1295.4 740 90.7
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 0.0e+00 1171.0 739 81.5
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 0.0e+00 1152.5 746 81.4
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 0.0e+00 1138.6 745 80.8
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 0.0e+00 1124.4 744 77.8
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 0.0e+00 1121.7 743 77.7
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 0.0e+00 1119.0 742 77.8
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 0.0e+00 1117.4 737 78.8
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 0.0e+00 1116.7 737 78.8
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 7.8e-261 904.0 747 65.1
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 1.3e-260 903.3 748 64.7
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 1.5e-251 873.2 744 62.9
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.3e-249 865.9 748 61.2
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 5.2e-249 864.8 744 61.7
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 1.5e-248 863.2 748 61.6
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 7.1e-246 854.4 739 61.7
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 1.5e-243 846.7 740 61.2
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 7.3e-243 844.3 742 61.9
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 7.3e-243 844.3 742 61.9
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 7.3e-243 844.3 742 61.9
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.6e-242 842.0 742 61.9
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 6.2e-242 841.3 749 60.6
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 1.3e-239 833.6 749 59.8
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 6.4e-239 831.2 747 59.2
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 1.9e-238 829.7 739 60.4
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 1.0e-236 823.9 744 60.6
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 1.3e-236 823.5 745 59.3
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 1.1e-235 820.5 737 59.8
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 3.3e-235 818.9 740 60.4
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 9.6e-235 817.4 742 60.1
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 7.1e-230 801.2 742 59.3
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 9.6e-227 790.8 727 60.1
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 6.2e-226 788.1 800 55.1
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 8.1e-226 787.7 737 58.8
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 2.6e-224 782.7 725 59.6
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 3.4e-224 782.3 725 59.6
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 4.5e-224 781.9 751 55.8
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 2.9e-223 779.2 741 57.6
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 4.6e-221 771.9 738 58.1
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 2.5e-219 766.1 749 56.3
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 1.3e-218 763.8 743 58.0
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 1.3e-218 763.8 744 56.3
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 1.8e-217 760.0 745 55.8
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 4.0e-217 758.8 757 57.3
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 7.6e-216 754.6 747 57.6
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 4.2e-214 748.8 888 49.1
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 7.1e-214 748.0 740 56.1
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 6.0e-213 745.0 741 53.7
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 6.0e-213 745.0 744 55.6
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 8.7e-212 741.1 741 53.2
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 1.6e-210 736.9 738 53.5
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 4.8e-210 735.3 750 53.6
Peaxi162Scf00126g00524 Petunia axillaris HOM05D002653 ORTHO05D002623 6.3e-210 734.9 723 54.2
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 1.4e-209 733.8 749 54.6
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 1.8e-209 733.4 744 54.4
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 3.1e-209 732.6 485 78.8
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 2.2e-207 726.5 759 54.8
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 1.1e-206 724.2 766 54.4
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 3.2e-206 722.6 748 53.7
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 3.2e-206 722.6 748 53.7
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 5.5e-206 721.8 748 53.5
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 1.2e-205 720.7 745 53.8
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 6.1e-205 718.4 744 53.2
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 3.9e-204 715.7 749 53.3
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 3.3e-203 712.6 747 52.7
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 9.7e-203 711.1 745 53.3
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 5.3e-201 705.3 759 51.4
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 2.0e-200 703.4 775 51.5
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 2.0e-200 703.4 745 52.1
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 4.5e-200 702.2 743 52.0
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 4.5e-200 702.2 759 51.3
Migut.L00786 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.7e-199 700.3 745 51.9
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 9.4e-198 694.5 754 52.3
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 2.1e-197 693.3 745 51.5
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 2.0e-195 686.8 776 50.9
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 2.0e-195 686.8 744 51.7
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 5.5e-190 668.7 757 50.7
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 1.2e-189 667.5 756 50.8
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 2.4e-185 653.3 756 49.3
AUR62007656 Chenopodium quinoa HOM05D002653 ORTHO05D002623 1.6e-184 650.6 720 50.4
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 2.5e-174 616.7 745 45.5
CSS0047039 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 3.0e-172 609.8 447 70.0
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 2.8e-170 603.2 745 47.2
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 3.6e-165 586.3 743 46.3
MD09G1170300 Malus domestica HOM05D002653 ORTHO05D002623 8.3e-162 575.1 616 54.1
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 3.1e-161 573.2 480 61.9
MELO3C010025.2 Cucumis melo HOM05D002653 ORTHO05D002623 3.5e-144 516.5 420 66.9
COL.COLO4_33575 Corchorus olitorius HOM05D002653 ORTHO05D002623 2.7e-136 490.3 390 67.2
Ca_27225_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 2.1e-133 480.7 353 73.1
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 7.3e-118 429.1 752 37.1
Ca_01486_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 6.9e-116 422.5 266 82.0
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 9.9e-107 392.1 384 56.8
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 3.8e-106 390.2 617 40.0
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.1e-105 388.7 413 52.1
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 1.1e-102 378.6 681 37.6
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 1.6e-101 374.8 425 48.5
Ca_30710_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.2e-99 368.6 292 67.1
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.9e-97 361.3 377 53.1
arahy.Tifrunner.gnm1.ann1.LJ799F Arachis hypogaea HOM05D002653 ORTHO05D002623 3.5e-96 357.1 354 59.3
Haze_24502 Corylus avellana HOM05D002653 ORTHO05D002623 6.3e-93 346.3 260 68.1
Os08g0116566 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 4.1e-92 343.6 365 49.6
Gorai.012G024500 Gossypium raimondii HOM05D002653 ORTHO05D002623 1.3e-90 338.6 303 62.0
FAN05G4926 Fragaria x ananassa HOM05D002653 ORTHO05D002623 2.9e-82 310.8 301 57.5
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 1.5e-70 271.9 379 45.1
HPP92_001361 Vanilla planifolia HOM05D002653 ORTHO05D002623 2.2e-66 258.1 413 41.2
Hma1.2p1_2738F.1_g327710 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 2.5e-65 254.6 406 42.6
arahy.Tifrunner.gnm1.ann1.FGIJ89 Arachis hypogaea HOM05D002653 ORTHO05D002623 3.4e-62 244.2 262 55.0
CBR_g47051 Chara braunii HOM05D002653 ORTHO05D002623 1.5e-57 228.8 1019 23.8
SEGI_11936 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 3.7e-53 214.2 398 33.7
Aqoxy4G01176 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 5.7e-46 190.3 143 67.1
Hma1.2p1_2738F.1_g327700 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 1.3e-45 189.1 147 63.3
Haze_24503 Corylus avellana HOM05D002653 ORTHO05D002623 2.1e-40 171.8 107 82.2
arahy.Tifrunner.gnm1.ann1.U4FA7I Arachis hypogaea HOM05D002653 ORTHO05D002623 6.4e-37 160.2 114 74.6
Actinidia28837 Actinidia chinensis HOM05D002653 ORTHO05D002623 1.4e-31 142.5 108 68.5
Ca_09437_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 2.3e-31 141.7 95 81.1
HPP92_000045 Vanilla planifolia HOM05D002653 ORTHO05D002623 4.4e-30 137.5 137 54.0
Actinidia28775 Actinidia chinensis HOM05D002313 ORTHO05D002623 5.1e-26 124.0 149 47.7
PRCOL_00001171 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 3.4e-22 111.3 561 24.4
SEGI_37137 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 9.9e-22 109.8 73 72.6
Cfa027332 Carpinus fangiana HOM05D001092 ORTHO05D000923 5.1e-18 97.4 219 28.8
SalBow2G0206 Salvia bowleyana HOM05D007496 ORTHO05D009479 9.6e-17 93.2 224 30.4
HPP92_010163 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.6e-16 92.4 113 47.8
arahy.Tifrunner.gnm1.ann1.P3JCM3 Arachis hypogaea HOM05D002653 ORTHO05D002623 4.0e-15 87.8 96 56.2
Actinidia28844 Actinidia chinensis HOM05D002313 ORTHO05D002623 1.2e-14 86.3 67 68.7
arahy.Tifrunner.gnm1.ann1.Y0I0AR Arachis hypogaea HOM05D002653 ORTHO05D002623 9.9e-14 83.2 60 76.7
PRCOL_00005014 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 3.5e-11 74.7 362 23.8
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.9e-09 68.9 91 50.5
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 5.8e-06 57.4 285 23.2
Cre17.g727600 Chlamydomonas reinhardtii HOM05D002653 ORTHO05D002623 7.6e-06 57.0 195 23.6
Lsat_1_v5_gn_9_85160 Lactuca sativa HOM05D002653 ORTHO05D002623 7.6e-06 57.0 47 53.2


User provided reference genes

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