Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G296200 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 7.2e-278 960.3 623 100.0
VMungo0251G1783 Vigna mungo HOM05D002129 ORTHO05D002188 2.2e-194 682.9 620 69.5
Glyma.05G215000 Glycine max HOM05D002129 ORTHO05D002188 1.4e-143 514.2 626 58.5
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 6.7e-114 415.6 627 43.1
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 4.5e-110 402.9 622 51.1
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 1.0e-106 391.7 654 42.2
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 2.7e-99 367.1 702 39.6
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 2.6e-94 350.5 644 39.4
Psat7g027480 Pisum sativum HOM05D002129 ORTHO05D002188 3.9e-90 336.7 773 35.6
Ca_17496_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.8e-79 301.2 599 36.7
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 3.4e-78 297.0 645 37.5
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.0e-77 295.4 650 35.1
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 6.5e-61 239.6 650 31.7
Lalb_Chr16g0376981 Lupinus albus HOM05D002129 ORTHO05D002188 3.4e-57 227.3 862 28.7
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 2.6e-49 201.1 612 29.6
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 3.7e-48 197.2 552 29.2
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 1.2e-46 192.2 612 32.8
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 6.6e-45 186.4 580 30.0
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 9.5e-44 182.6 613 33.9
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 1.7e-40 171.8 584 26.7
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 1.3e-37 162.2 607 26.5
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 3.0e-37 161.0 601 26.3
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 5.0e-37 160.2 713 25.5
VMungo0251G1208 Vigna mungo HOM05D002129 ORTHO05D002188 6.6e-37 159.8 243 48.6
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.9e-36 158.3 717 24.8
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 3.3e-36 157.5 681 25.8
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 3.3e-36 157.5 584 26.4
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 1.4e-34 152.1 594 28.6
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 2.3e-34 151.4 824 24.3
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 2.3e-34 151.4 575 26.3
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 6.8e-34 149.8 713 25.1
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 7.5e-33 146.4 611 30.3
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 1.9e-31 141.7 605 31.6
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 9.2e-31 139.4 647 25.3
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 9.2e-31 139.4 515 26.0
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.2e-30 139.0 322 32.6
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.2e-30 139.0 322 32.6
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.5e-30 137.5 717 24.4
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 6.0e-30 136.7 717 24.5
Phvul.002G163000 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 1.0e-29 136.0 631 26.1
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.2e-27 129.0 499 30.7
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 4.7e-27 127.1 584 24.8
TPR.G6696 Trifolium pratense HOM05D002129 ORTHO05D002188 4.7e-27 127.1 447 28.0
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 4.0e-26 124.0 577 24.6
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 4.0e-26 124.0 597 27.0
Ca_24520_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 6.8e-26 123.2 504 28.0
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 8.9e-26 122.9 381 28.1
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 1.2e-25 122.5 580 24.8
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 1.5e-25 122.1 500 26.6
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 2.6e-25 121.3 667 31.2
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 3.4e-25 120.9 590 25.3
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 5.8e-25 120.2 491 31.2
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 7.5e-25 119.8 492 33.1
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 7.5e-25 119.8 487 26.1
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 9.9e-25 119.4 330 28.2
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 2.2e-24 118.2 255 32.9
CsaV3_4G006410 Cucumis sativus L. HOM05D002129 ORTHO05D002188 4.1e-23 114.0 612 23.5
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 1.2e-22 112.5 629 27.7
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 3.5e-22 110.9 632 25.0
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 7.8e-22 109.8 629 27.3
FAN08G2732 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.3e-21 109.0 338 29.9
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 3.9e-21 107.5 601 28.3
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 8.6e-21 106.3 574 26.0
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 1.5e-20 105.5 602 24.9
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.3e-20 104.0 247 30.0
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 4.3e-20 104.0 654 27.4
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.1e-19 101.7 313 28.1
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 6.2e-19 100.1 336 25.6
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 6.2e-19 100.1 246 31.3
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 1.8e-18 98.6 631 25.2
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 2.4e-18 98.2 582 26.8
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 8.9e-18 96.3 682 27.1
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 1.2e-17 95.9 623 21.8
VMungo1215G3208 Vigna mungo HOM05D002129 ORTHO05D002188 2.0e-17 95.1 258 35.3
Psat0s4440g0080 Pisum sativum HOM05D002129 ORTHO05D002188 2.6e-17 94.7 361 31.9
Nitab4.5_0002213g0050 Nicotiana tabacum HOM05D002129 ORTHO05D002188 4.4e-17 94.0 601 27.5
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 7.6e-17 93.2 575 22.8
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 9.9e-17 92.8 621 22.1
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 9.9e-17 92.8 624 21.5
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 9.9e-17 92.8 313 26.2
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.3e-16 92.4 624 21.6
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.7e-16 92.0 683 27.2
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.7e-16 92.0 230 29.6
Sed0023438 Sechium edule HOM05D002129 ORTHO05D002188 1.7e-16 92.0 638 24.3
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 2.2e-16 91.7 259 28.2
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 2.2e-16 91.7 581 23.9
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 4.9e-16 90.5 458 22.5
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.1e-15 89.4 296 25.3
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 1.9e-15 88.6 343 31.2
CARHR046640 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.4e-15 88.2 625 22.7
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.4e-15 88.2 272 25.7
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 2.4e-15 88.2 653 23.1
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 3.2e-15 87.8 647 22.6
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 3.2e-15 87.8 638 23.7
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 4.1e-15 87.4 589 20.5
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 4.1e-15 87.4 354 25.7
HanXRQChr17g0535111 Helianthus annuus HOM05D002129 ORTHO05D002188 1.2e-14 85.9 259 27.4
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 1.2e-14 85.9 268 27.6
Sed0025225 Sechium edule HOM05D002129 ORTHO05D002188 1.6e-14 85.5 485 27.0
Oeu042385.1 Olea europaea HOM05D002129 ORTHO05D002188 4.6e-14 84.0 178 32.6
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 6.0e-14 83.6 223 30.5
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 6.0e-14 83.6 670 23.6
BcaB02g07879 Brassica carinata HOM05D002129 ORTHO05D002188 1.3e-13 82.4 325 26.5
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.7e-13 82.0 338 24.0
CARHR212790 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.3e-13 81.6 342 26.0
AT5G41780 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 3.9e-13 80.9 537 22.2
AL2G10620 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 8.7e-13 79.7 667 25.5
BcaC08g44555 Brassica carinata HOM05D002129 ORTHO05D002188 1.1e-12 79.3 335 26.3
A07p20910 Brassica napus HOM05D002129 ORTHO05D002188 1.1e-12 79.3 288 27.1
BraA07t29778Z Brassica rapa HOM05D002129 ORTHO05D002188 2.5e-12 78.2 337 27.0
BolC6t37201H Brassica oleracea HOM05D002129 ORTHO05D002188 3.3e-12 77.8 335 26.0
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 3.3e-12 77.8 539 21.2
BcaB07g31454 Brassica carinata HOM05D002129 ORTHO05D002188 5.6e-12 77.0 216 28.7
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 7.3e-12 76.6 659 22.2
BcaC04g22558 Brassica carinata HOM05D002129 ORTHO05D002188 9.6e-12 76.3 216 28.7
C09p17920 Brassica napus HOM05D002129 ORTHO05D002188 2.1e-11 75.1 216 28.2
BolC9t54689H Brassica oleracea HOM05D002129 ORTHO05D002188 2.1e-11 75.1 216 28.2
Gohir.A02G102300 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.1e-11 75.1 324 25.6
Sp2g00440 Schrenkiella parvula HOM05D002129 ORTHO05D002188 3.6e-11 74.3 306 25.5
A09p14800 Brassica napus HOM05D002129 ORTHO05D002188 4.7e-11 73.9 216 27.8
BraA09t37126Z Brassica rapa HOM05D002129 ORTHO05D002188 4.7e-11 73.9 216 27.8
HanXRQChr10g0292651 Helianthus annuus HOM05D002129 ORTHO05D002188 4.7e-11 73.9 497 21.9
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 4.7e-11 73.9 585 21.9
Oeu042386.1 Olea europaea HOM05D002129 ORTHO05D002188 4.7e-11 73.9 566 22.4
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 6.2e-11 73.6 539 20.8
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 8.1e-11 73.2 675 25.8
Actinidia27334 Actinidia chinensis HOM05D002129 ORTHO05D002188 1.4e-10 72.4 340 31.8
Thhalv10024082m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.4e-10 72.4 616 22.4
Thhalv10028203m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.8e-10 72.0 318 24.5
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 3.1e-10 71.2 375 21.1
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 9.0e-10 69.7 367 30.2
AL7G47480 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.0e-09 68.6 495 22.6
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 2.6e-09 68.2 596 21.6
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 4.4e-09 67.4 345 23.8
THA.LOC104823609 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 4.4e-09 67.4 350 27.1
Gohir.A08G099826 Gossypium hirsutum HOM05D002129 ORTHO05D002188 5.8e-09 67.0 197 32.0
Gorai.004G135300 Gossypium raimondii HOM05D002129 ORTHO05D002188 5.8e-09 67.0 202 32.2
AT1G64320 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 7.6e-09 66.6 571 25.2
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.3e-08 65.9 311 28.9
Gohir.A08G099784 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.3e-08 65.9 678 25.4
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 3.8e-08 64.3 504 25.2
EL10Ac5g12883 Beta vulgaris HOM05D002129 ORTHO05D002188 4.9e-08 63.9 352 23.6
Actinidia22719 Actinidia chinensis HOM05D002129 ORTHO05D002188 6.4e-08 63.5 319 23.5
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 8.4e-08 63.2 585 23.1
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 1.1e-07 62.8 274 24.1
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 1.9e-07 62.0 521 18.2
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 2.4e-07 61.6 220 23.6
AUR62019807 Chenopodium quinoa HOM05D002129 ORTHO05D002188 3.2e-07 61.2 553 21.9
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 4.2e-07 60.8 377 20.7
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.4e-07 60.5 464 19.8
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.4e-07 60.5 464 19.8
Gohir.D03G081800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 7.1e-07 60.1 526 25.5
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 9.3e-07 59.7 633 20.2
Gohir.D04G079828 Gossypium hirsutum HOM05D002129 ORTHO05D002188 9.3e-07 59.7 46 54.3
Gorai.003G081800 Gossypium raimondii HOM05D002129 ORTHO05D002188 9.3e-07 59.7 526 25.1
Gorai.004G135400 Gossypium raimondii HOM05D002129 ORTHO05D002188 9.3e-07 59.7 707 24.0
Medtr8g099290 Medicago truncatula HOM05D002129 ORTHO05D002188 9.3e-07 59.7 585 22.4
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 1.6e-06 58.9 305 22.6
Ah.12g052300 Amaranthus hybridus HOM05D002129 ORTHO05D002188 2.1e-06 58.5 513 20.1
AT1G64330 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 2.1e-06 58.5 45 62.2
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 2.1e-06 58.5 682 23.9
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 2.1e-06 58.5 46 54.3
AL2G10610 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.7e-06 58.2 45 62.2
CAN.G792.47 Capsicum annuum HOM05D002129 ORTHO05D002188 3.5e-06 57.8 687 19.1
Carub.0002s0049 Capsella rubella HOM05D002129 ORTHO05D002188 4.6e-06 57.4 629 21.8
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.6e-06 57.4 149 27.5
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 4.6e-06 57.4 375 22.1
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 6.0e-06 57.0 660 19.5
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 6.0e-06 57.0 163 23.9
arahy.Tifrunner.gnm1.ann1.F3VNHJ Arachis hypogaea HOM05D002129 ORTHO05D002188 7.8e-06 56.6 135 47.4
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 7.8e-06 56.6 681 21.1


User provided reference genes

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