Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 0.0e+00 1166.8 624 100.0
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 2.6e-291 1005.0 681 82.5
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.6e-237 826.2 691 65.7
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 6.7e-207 724.5 738 56.8
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 5.0e-202 708.4 667 58.6
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 8.5e-202 707.6 727 56.9
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 5.1e-199 698.4 605 63.5
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 5.1e-199 698.4 605 63.5
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.1e-185 654.1 724 52.9
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 4.0e-183 645.6 698 53.7
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.8e-181 639.4 696 53.7
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 5.2e-159 565.5 609 53.0
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 2.0e-158 563.5 606 52.8
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 9.8e-158 561.2 616 52.4
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 3.2e-156 556.2 630 51.6
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 5.4e-156 555.4 591 53.1
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 7.0e-156 555.1 610 52.3
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 1.6e-155 553.9 617 52.8
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.1e-153 547.7 642 49.5
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.2e-152 544.3 607 51.4
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.4e-151 540.8 621 51.2
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.2e-150 537.7 607 51.1
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 2.0e-150 537.0 618 49.2
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 7.5e-150 535.0 564 54.4
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.1e-148 531.2 563 54.2
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 3.2e-148 529.6 615 49.8
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 5.1e-146 522.3 592 49.8
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 5.6e-145 518.8 620 47.4
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.1e-144 516.9 587 51.8
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 8.3e-141 505.0 613 47.6
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 1.6e-139 500.7 569 49.7
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.3e-138 497.7 599 49.4
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 5.1e-138 495.7 593 48.1
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 5.1e-138 495.7 617 47.5
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 8.6e-138 495.0 604 47.7
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.5e-137 493.4 636 47.3
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 4.3e-137 492.7 633 48.0
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 7.3e-137 491.9 635 47.1
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.3e-137 491.9 635 47.2
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 9.6e-137 491.5 613 46.8
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 1.2e-136 491.1 594 49.0
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 2.8e-136 490.0 621 46.7
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 1.7e-133 480.7 611 47.3
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 4.9e-133 479.2 594 49.0
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 4.2e-132 476.1 567 50.3
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 7.1e-132 475.3 585 48.0
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 9.3e-132 474.9 597 49.4
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.0e-130 471.5 618 46.6
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 3.0e-130 469.9 540 51.1
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.3e-129 465.3 627 46.6
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 7.3e-129 465.3 565 48.0
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 2.1e-128 463.8 573 48.3
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 3.6e-128 463.0 629 45.2
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 4.8e-128 462.6 593 47.4
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 8.1e-128 461.8 601 46.3
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.4e-127 460.3 608 45.1
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 4.0e-127 459.5 600 47.3
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 6.9e-127 458.8 581 47.5
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 3.4e-126 456.4 730 41.2
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.2e-125 453.8 591 46.7
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 2.9e-125 453.4 635 44.7
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.9e-125 453.4 710 41.0
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.4e-124 451.1 589 45.7
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.4e-124 449.1 598 45.3
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.4e-124 449.1 597 45.7
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 5.4e-124 449.1 620 44.5
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 4.6e-123 446.0 704 39.9
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 3.0e-122 443.4 553 48.1
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 3.9e-122 443.0 630 44.3
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.5e-121 441.0 570 46.8
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 2.5e-121 440.3 551 47.2
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 3.3e-121 439.9 570 47.2
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.3e-120 438.0 570 46.1
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.6e-120 436.4 585 43.9
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 8.1e-120 435.3 598 45.5
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 8.1e-120 435.3 571 47.1
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.2e-118 431.4 599 42.9
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 7.6e-118 428.7 468 53.2
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.9e-117 426.8 597 44.1
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 2.9e-117 426.8 692 40.6
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.9e-117 426.0 580 44.1
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 3.2e-116 423.3 622 42.6
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 2.7e-115 420.2 554 46.2
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 3.9e-114 416.4 636 42.8
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 5.1e-114 416.0 607 44.2
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 5.1e-114 416.0 716 38.1
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.5e-113 414.5 609 43.8
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-113 414.1 711 38.4
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 3.3e-113 413.3 893 35.1
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 7.4e-113 412.1 635 41.4
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 1.3e-112 411.4 594 42.9
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 5.3e-111 406.0 660 39.4
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.2e-109 400.6 564 42.4
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 4.9e-109 399.4 683 40.0
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 3.9e-106 389.8 474 49.6
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.6e-104 384.4 296 68.6
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 5.8e-102 375.9 733 36.6
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 3.5e-99 366.7 543 41.4
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.1e-95 355.1 471 46.7
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 6.9e-95 352.4 479 46.3
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 1.0e-90 338.6 355 56.9
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 9.4e-84 315.5 259 62.2
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 8.0e-75 285.8 235 61.3
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.8e-74 284.6 191 71.2
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 2.7e-70 270.8 702 30.3
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 3.8e-69 266.9 575 32.9
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.5e-68 264.2 552 33.9
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 6.1e-67 259.6 246 57.3
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.4e-66 258.5 552 33.5
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 4.8e-64 250.0 209 63.2
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.4e-63 248.4 601 31.4
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 5.5e-60 236.5 197 61.4
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.0e-59 232.6 550 30.5
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 8.3e-48 196.1 139 71.9
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 3.2e-47 194.1 242 47.5
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 3.5e-46 190.7 181 57.5
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.7e-43 180.3 244 43.0
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 5.8e-41 173.3 228 42.5
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 3.4e-33 147.5 150 53.3
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 3.5e-30 137.5 202 39.1
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 4.3e-28 130.6 231 35.9
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 7.3e-28 129.8 194 41.2
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 7.3e-28 129.8 194 41.2
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 4.4e-25 120.6 100 59.0
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 3.7e-24 117.5 219 38.8
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 6.6e-21 106.7 357 28.3
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.1e-20 105.9 139 43.2
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 8.1e-19 99.8 80 57.5
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.7e-16 92.0 152 40.8
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 4.2e-15 87.4 136 36.0
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 5.4e-15 87.0 104 45.2
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.1e-14 85.1 61 63.9
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 2.5e-12 78.2 107 44.9
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 9.6e-12 76.3 48 77.1
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.6e-11 75.5 87 46.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 2.8e-11 74.7 49 65.3
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.0e-09 68.6 131 35.9
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.0e-09 68.6 103 39.8
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 3.4e-09 67.8 172 31.4
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 5.8e-09 67.0 143 34.3
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.7e-08 65.5 105 33.3
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 6.4e-08 63.5 290 27.2
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 8.4e-08 63.2 256 28.5
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 8.4e-08 63.2 164 30.5
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.4e-07 62.4 214 26.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 2.4e-07 61.6 157 29.3
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 3.2e-07 61.2 135 34.1
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 5.4e-07 60.5 302 25.5
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 7.1e-07 60.1 179 29.6
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 7.1e-07 60.1 118 33.1
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 7.1e-07 60.1 134 30.6
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 9.3e-07 59.7 331 24.2
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.2e-06 59.3 76 40.8
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 1.6e-06 58.9 159 33.3
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 2.7e-06 58.2 56 57.1
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 4.6e-06 57.4 161 28.6
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 4.6e-06 57.4 176 31.2


User provided reference genes

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