Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 2.7e-101 372.1 201 100.0
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.2e-75 287.0 195 82.6
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 4.5e-64 248.4 195 74.9
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.1e-53 213.0 199 66.3
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.5e-51 206.8 226 56.2
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 2.9e-50 202.6 226 56.2
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.9e-50 202.6 216 58.3
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.6e-48 196.8 211 56.4
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.6e-48 196.8 210 56.7
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 2.1e-45 186.4 215 54.4
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 6.2e-45 184.9 217 53.5
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 6.2e-45 184.9 223 55.2
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 8.0e-45 184.5 213 53.1
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.1e-44 184.1 220 55.5
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 1.8e-44 183.3 220 54.5
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 6.8e-44 181.4 211 53.1
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 8.9e-44 181.0 220 53.6
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 1.2e-43 180.6 223 53.8
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.2e-43 180.6 216 54.6
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.5e-43 180.3 213 54.9
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.0e-43 179.9 218 55.0
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 2.6e-43 179.5 222 54.1
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 4.4e-43 178.7 223 50.7
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 4.4e-43 178.7 213 54.5
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 7.5e-43 177.9 221 52.9
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 7.5e-43 177.9 221 52.9
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 9.8e-43 177.6 218 52.8
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 9.8e-43 177.6 219 55.3
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-42 177.2 222 52.7
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-42 177.2 221 52.9
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.3e-42 177.2 235 51.5
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.7e-42 176.8 218 54.6
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.7e-42 175.6 222 53.2
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 4.9e-42 175.3 197 55.3
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 4.9e-42 175.3 211 53.6
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 4.9e-42 175.3 201 55.7
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 4.9e-42 175.3 234 50.9
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 6.4e-42 174.9 207 56.0
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 6.4e-42 174.9 203 52.7
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 6.4e-42 174.9 223 51.6
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 6.4e-42 174.9 222 52.7
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 8.3e-42 174.5 216 55.1
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.9e-41 173.3 203 53.2
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 2.4e-41 172.9 224 50.4
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 3.2e-41 172.6 203 52.2
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.1e-41 172.2 215 53.0
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 5.4e-41 171.8 226 52.2
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 7.0e-41 171.4 241 47.3
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 7.0e-41 171.4 241 47.3
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 7.0e-41 171.4 216 53.2
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 7.0e-41 171.4 226 51.8
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 9.2e-41 171.0 215 52.6
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.6e-40 170.2 226 51.8
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.1e-40 169.9 218 50.9
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.7e-40 169.5 222 50.0
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.7e-40 169.5 211 53.1
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 2.7e-40 169.5 218 54.1
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 3.5e-40 169.1 203 51.2
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 3.5e-40 169.1 203 51.2
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 3.5e-40 169.1 217 50.2
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 6.0e-40 168.3 222 50.5
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.0e-39 167.5 198 52.0
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 1.0e-39 167.5 206 52.9
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.3e-39 167.2 220 49.1
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 1.3e-39 167.2 225 49.3
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.0e-39 166.0 222 48.2
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 3.0e-39 166.0 248 46.4
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.6e-39 164.9 235 50.2
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.1e-38 164.1 265 44.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 1.1e-38 164.1 232 47.8
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.5e-38 163.7 222 46.8
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 3.3e-38 162.5 254 48.0
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 4.3e-38 162.2 224 49.6
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 5.6e-38 161.8 214 48.1
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 7.3e-38 161.4 220 48.6
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.6e-37 160.2 199 50.8
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 3.6e-37 159.1 216 50.0
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 4.7e-37 158.7 249 45.4
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 6.2e-37 158.3 209 51.7
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.1e-36 157.5 209 50.2
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.1e-36 157.5 213 50.7
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.1e-36 157.5 218 49.1
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.1e-36 157.5 215 48.8
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.3e-36 156.4 219 51.6
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.3e-36 156.4 211 50.2
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.3e-36 156.4 217 48.8
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 5.2e-36 155.2 215 49.8
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 8.9e-36 154.5 214 50.0
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.5e-35 153.7 224 47.8
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.7e-34 150.2 213 47.4
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.7e-34 150.2 212 48.1
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 6.4e-34 148.3 224 46.4
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.4e-33 147.1 218 44.5
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.4e-33 147.1 218 44.5
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.4e-33 147.1 235 46.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 5.4e-33 145.2 216 44.4
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 5.4e-33 145.2 216 44.4
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 5.4e-33 145.2 216 44.4
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.2e-32 144.1 202 48.5
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.6e-32 143.7 207 46.9
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 4.6e-32 142.1 203 48.3
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 6.0e-32 141.7 222 45.9
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 7.8e-32 141.4 126 66.7
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.3e-31 140.6 219 48.9
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.0e-31 139.4 217 44.2
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 5.1e-31 138.7 213 48.4
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 6.6e-31 138.3 218 44.5
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.5e-30 137.1 226 46.0
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.9e-30 136.7 213 46.9
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 4.3e-30 135.6 206 47.6
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.2e-29 134.0 201 45.8
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.1e-29 133.3 319 34.5
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.6e-29 132.5 173 52.0
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.1e-28 131.0 198 45.5
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.1e-28 131.0 198 45.5
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.2e-28 128.6 171 53.8
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 8.9e-28 127.9 191 45.5
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.0e-27 126.7 202 45.0
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 3.4e-27 125.9 209 45.0
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 9.9e-27 124.4 201 48.3
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.9e-26 122.9 181 48.6
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 8.4e-26 121.3 214 42.5
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 5.4e-25 118.6 205 43.9
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 3.3e-22 109.4 211 37.9
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.6e-21 107.1 199 41.7
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 2.4e-20 103.2 146 50.0
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.0e-20 102.4 307 33.6
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 5.3e-20 102.1 79 69.6
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.6e-19 99.8 166 45.8
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 2.9e-18 96.3 155 46.5
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 2.1e-16 90.1 246 32.5
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.6e-13 80.5 128 46.1
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 2.1e-13 80.1 139 45.3
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.8e-12 77.0 188 37.8
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 2.6e-11 73.2 183 37.2
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 3.8e-10 69.3 71 53.5
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 4.6e-08 62.4 74 51.4
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 7.9e-08 61.6 113 47.8
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 6.7e-07 58.5 137 38.0
Glyma.14G118550 Glycine max HOM05D000076 ORTHO05D005500 8.7e-07 58.2 57 63.2
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 8.7e-07 58.2 57 63.2
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.5e-06 56.6 43 67.4
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.3e-06 55.8 43 67.4
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 7.4e-06 55.1 78 51.3
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 9.6e-06 54.7 187 30.5


User provided reference genes

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