Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 4.8e-210 734.2 355 100.0
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.3e-202 709.5 355 96.3
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 8.3e-186 653.7 354 90.1
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 3.9e-167 591.7 356 81.2
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 8.9e-164 580.5 356 79.5
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 8.9e-164 580.5 327 85.9
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 3.4e-163 578.6 356 81.2
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 1.7e-162 576.2 356 80.6
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 1.7e-162 576.2 353 80.2
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 2.1e-160 569.3 353 79.0
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 2.4e-153 545.8 321 84.1
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 2.8e-149 532.3 386 70.7
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 1.2e-131 473.8 355 68.7
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 1.5e-115 420.2 225 87.1
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 1.0e-111 407.5 356 59.8
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 5.1e-111 405.2 354 58.2
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 3.3e-110 402.5 355 56.6
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 1.1e-108 397.5 351 58.4
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 1.4e-108 397.1 354 57.3
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 3.1e-108 396.0 355 56.1
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.2e-107 394.0 356 58.4
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 7.7e-107 391.3 354 58.2
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 6.5e-106 388.3 359 55.7
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 6.5e-106 388.3 365 55.1
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 2.5e-105 386.3 353 55.5
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 2.7e-104 382.9 357 55.7
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 3.9e-103 379.0 364 54.4
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 5.1e-103 378.6 356 55.1
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 5.1e-103 378.6 357 56.0
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 1.5e-102 377.1 360 55.8
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.0e-102 376.7 359 57.1
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 9.7e-102 374.4 353 54.7
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 1.7e-101 373.6 364 53.6
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.7e-101 372.5 358 54.7
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.1e-100 369.4 356 54.2
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 6.9e-100 368.2 345 55.4
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 6.9e-100 368.2 345 55.4
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 1.2e-99 367.5 354 54.0
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 2.6e-99 366.3 345 55.1
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.8e-98 362.5 355 53.0
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 3.8e-98 362.5 224 75.4
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 6.5e-98 361.7 328 57.9
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 1.1e-97 360.9 353 54.1
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 1.4e-97 360.5 333 56.2
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 3.2e-97 359.4 224 74.6
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 4.2e-97 359.0 376 54.3
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 9.4e-97 357.8 352 54.3
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.2e-96 357.5 270 64.8
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 1.6e-96 357.1 224 72.8
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 2.1e-96 356.7 310 58.1
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 2.7e-96 356.3 268 63.8
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 7.9e-96 354.8 224 71.9
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 1.4e-95 354.0 397 49.6
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 3.0e-95 352.8 320 57.5
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 5.1e-95 352.1 276 62.7
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 8.8e-95 351.3 342 54.4
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.1e-94 350.9 234 68.4
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 4.4e-94 349.0 369 50.1
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 7.4e-94 348.2 301 58.1
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 7.4e-94 348.2 354 52.0
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.7e-94 347.8 353 52.1
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 2.8e-93 346.3 234 67.5
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 2.8e-93 346.3 267 60.7
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 2.8e-93 346.3 223 72.2
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 3.7e-93 345.9 220 73.6
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 4.8e-93 345.5 309 56.3
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 4.8e-93 345.5 309 57.3
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 8.2e-93 344.7 288 58.7
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 8.2e-93 344.7 352 51.1
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 1.4e-92 344.0 222 69.4
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 1.4e-92 344.0 307 55.4
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 1.8e-92 343.6 267 61.4
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 1.8e-92 343.6 267 61.4
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 4.1e-92 342.4 295 56.9
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.5e-91 340.5 292 57.5
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 1.5e-91 340.5 318 59.1
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.6e-91 339.7 220 69.5
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 4.5e-91 339.0 351 51.6
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 7.7e-91 338.2 351 51.3
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 1.0e-90 337.8 224 68.3
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 1.0e-90 337.8 279 60.2
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 1.7e-90 337.0 358 50.8
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.9e-90 336.3 295 57.6
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 3.8e-90 335.9 227 67.0
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 6.5e-90 335.1 295 57.3
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 8.5e-90 334.7 350 50.9
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 2.5e-89 333.2 270 60.4
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 5.5e-89 332.0 289 59.2
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 7.2e-89 331.6 359 51.0
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 2.1e-88 330.1 341 51.6
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 4.4e-86 322.4 221 67.0
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 3.7e-85 319.3 339 49.0
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 1.4e-84 317.4 330 53.9
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 5.3e-84 315.5 166 88.6
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 7.0e-84 315.1 297 52.2
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.2e-83 314.3 224 63.4
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 7.7e-83 311.6 349 47.3
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 1.0e-82 311.2 291 56.0
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.9e-82 309.7 328 52.1
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 5.0e-82 308.9 241 58.1
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 2.5e-81 306.6 267 56.6
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 9.4e-81 304.7 330 49.7
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 8.0e-80 301.6 351 45.9
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 3.8e-74 282.7 215 60.5
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 6.5e-74 282.0 196 68.4
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 3.2e-73 279.6 237 56.5
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 6.1e-72 275.4 222 58.6
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 1.0e-71 274.6 214 59.8
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 4.4e-70 269.2 290 49.7
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 8.3e-69 265.0 206 59.2
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 4.1e-68 262.7 225 53.8
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 2.0e-67 260.4 238 57.1
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.9e-67 258.8 216 56.0
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 7.7e-67 258.5 198 60.6
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 7.7e-67 258.5 206 57.8
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 5.0e-66 255.8 254 52.0
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 1.2e-64 251.1 199 59.3
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 4.0e-63 246.1 252 53.6
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 5.7e-62 242.3 215 51.6
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 1.7e-61 240.7 207 55.1
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 4.9e-61 239.2 151 76.2
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 2.4e-60 236.9 216 51.9
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 4.1e-60 236.1 151 69.5
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 3.0e-50 203.4 182 52.2
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 1.9e-49 200.7 206 45.6
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 2.0e-46 190.7 251 42.6
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 1.8e-39 167.5 226 41.2
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 4.9e-37 159.5 97 75.3
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 2.4e-36 157.1 162 46.3
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 2.4e-36 157.1 232 39.2
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.2e-32 144.8 121 55.4
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 2.5e-25 120.6 102 52.9
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 1.4e-23 114.8 60 90.0
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 3.2e-20 103.6 82 59.8
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 5.1e-18 96.3 58 77.6
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 5.6e-09 66.2 38 84.2
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 1.4e-07 61.6 76 44.7
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 6.9e-07 59.3 39 66.7


User provided reference genes

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