Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 9.1e-58 226.9 129 100.0
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 4.2e-55 218.0 129 96.9
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 2.6e-52 208.8 129 93.0
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 4.4e-52 208.0 130 93.1
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 1.3e-51 206.5 129 89.9
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 4.8e-51 204.5 129 89.9
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 4.8e-51 204.5 130 92.3
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 6.3e-51 204.1 129 89.9
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 5.3e-50 201.1 129 87.6
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 7.0e-50 200.7 130 90.0
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 9.1e-50 200.3 129 87.6
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 9.1e-50 200.3 129 87.6
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 9.1e-50 200.3 129 87.6
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 2.6e-49 198.7 129 87.6
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 2.6e-49 198.7 129 87.6
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 86.8
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 86.8
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 1.0e-48 196.8 129 84.5
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.3e-48 196.4 132 87.1
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.3e-48 196.4 129 88.4
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 1.3e-48 196.4 133 85.7
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.7e-48 196.1 131 87.8
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 86.0
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 86.0
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 84.5
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 84.5
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 5.0e-48 194.5 129 84.5
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 5.0e-48 194.5 133 85.0
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 5.0e-48 194.5 127 85.0
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 6.5e-48 194.1 129 85.3
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 8.5e-48 193.7 129 85.3
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 1.1e-47 193.4 133 83.5
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.9e-47 192.6 129 84.5
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.9e-47 192.6 128 84.4
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 3.2e-47 191.8 129 84.5
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 4.2e-47 191.4 130 85.4
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 4.2e-47 191.4 127 83.5
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 7.2e-47 190.7 129 86.0
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 7.2e-47 190.7 129 83.7
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.7e-46 188.7 129 84.5
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 80.6
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 81.4
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 81.4
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 1.4e-45 186.4 132 83.3
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 1.8e-45 186.0 132 83.3
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 2.3e-45 185.7 129 82.2
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 2.3e-45 185.7 128 84.4
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 3.0e-45 185.3 132 83.3
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.0e-45 185.3 129 81.4
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 3.0e-45 185.3 129 82.9
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 5.2e-45 184.5 132 82.6
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 6.7e-45 184.1 132 82.6
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 6.7e-45 184.1 132 81.8
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.2e-44 183.3 133 82.0
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 1.2e-44 183.3 129 81.4
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 2.0e-44 182.6 131 82.4
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.0e-44 182.6 150 73.3
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 2.6e-44 182.2 116 89.7
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 3.3e-44 181.8 129 82.2
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 4.4e-44 181.4 129 80.6
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 5.7e-44 181.0 129 80.6
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 9.7e-44 180.3 127 78.7
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.3e-43 179.9 129 78.3
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.3e-43 179.9 127 78.7
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.7e-43 179.5 117 86.3
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 3.7e-43 178.3 129 81.4
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 4.8e-43 177.9 126 78.6
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 1.1e-42 176.8 161 67.7
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.8e-42 176.0 129 81.4
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.4e-42 175.6 119 87.4
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 3.1e-42 175.3 116 86.2
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 4.1e-42 174.9 116 85.3
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 4.1e-42 174.9 117 86.3
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 5.3e-42 174.5 116 87.1
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 7.0e-42 174.1 116 85.3
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 9.1e-42 173.7 121 81.8
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 9.1e-42 173.7 122 81.1
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 9.1e-42 173.7 130 80.8
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 1.6e-41 172.9 121 81.0
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.6e-41 172.9 122 80.3
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 1.6e-41 172.9 116 86.2
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.6e-41 172.9 128 79.7
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 2.7e-41 172.2 128 76.6
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 5.9e-41 171.0 114 85.1
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 5.9e-41 171.0 120 81.7
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 3.8e-40 168.3 129 77.5
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.1e-39 166.8 116 81.9
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.5e-39 166.4 129 76.0
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 2.5e-39 165.6 130 77.7
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 2.1e-38 162.5 133 75.2
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 2.7e-38 162.2 152 67.1
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 2.7e-38 162.2 126 73.8
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 8.0e-38 160.6 112 81.2
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 3.0e-37 158.7 129 72.9
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 3.0e-37 158.7 129 75.2
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 1.2e-36 156.8 116 80.2
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.5e-36 156.4 131 75.6
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.5e-36 156.4 131 75.6
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 2.0e-36 156.0 132 74.2
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 9.8e-36 153.7 130 74.6
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.3e-35 153.3 126 72.2
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.7e-35 152.9 116 78.4
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 8.3e-35 150.6 112 79.5
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 7.0e-34 147.5 132 71.2
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 5.9e-33 144.4 132 69.7
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.3e-32 143.3 132 70.5
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 1.7e-32 142.9 128 67.2
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.2e-31 138.7 128 67.2
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 5.5e-31 137.9 129 66.7
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 7.2e-31 137.5 132 67.4
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 1.2e-30 136.7 119 73.9
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 2.1e-30 136.0 95 82.1
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 4.0e-29 131.7 114 69.3
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 6.8e-29 131.0 110 70.9
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 4.4e-28 128.3 131 62.6
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 9.8e-28 127.1 94 75.5
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 9.8e-28 127.1 82 87.8
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 9.8e-28 127.1 142 58.5
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 4.1e-26 121.7 86 81.4
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 5.4e-26 121.3 80 82.5
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 7.0e-26 120.9 134 59.0
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.5e-25 118.6 81 84.0
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 1.0e-24 117.1 128 60.9
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.3e-24 116.7 125 60.0
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 1.7e-24 116.3 68 94.1
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 2.9e-24 115.5 129 58.9
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 7.3e-23 110.9 136 57.4
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 2.8e-22 109.0 66 89.4
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 5.2e-21 104.8 70 81.4
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 4.4e-20 101.7 68 82.4
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 7.5e-20 100.9 121 54.5
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 1.7e-19 99.8 83 65.1
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 9.2e-18 94.0 60 90.0
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 3.9e-16 88.6 54 90.7
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 5.0e-16 88.2 58 82.8
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 6.6e-16 87.8 270 32.6
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 7.3e-15 84.3 64 76.6
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.1e-14 82.8 61 77.0
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 2.1e-14 82.8 54 83.3
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 6.2e-14 81.3 87 52.9
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 8.9e-13 77.4 75 66.7
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 5.4e-10 68.2 48 83.3
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 4.3e-07 58.5 40 77.5


User provided reference genes

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