Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1763.4 850 100.0
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1639.8 850 92.6
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1540.8 853 86.3
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1475.7 854 82.4
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1464.9 853 81.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1462.6 854 81.9
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1460.3 853 81.2
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1446.8 851 80.4
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1424.8 852 80.0
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1402.1 857 78.5
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1389.0 857 77.9
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1379.4 851 78.4
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1343.2 854 76.1
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1335.1 856 75.2
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1285.0 850 73.2
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1269.2 851 70.0
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1261.1 884 71.2
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1253.4 851 69.9
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1240.3 850 69.4
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1239.9 852 69.2
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1233.8 755 77.5
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1226.1 850 68.0
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1219.5 850 68.7
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1218.4 850 66.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1212.2 854 66.9
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1209.9 852 67.5
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1209.5 848 67.6
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1208.7 857 67.6
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1205.3 851 66.9
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1204.1 849 67.7
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1203.0 856 66.8
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1201.4 850 66.9
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1200.3 856 66.8
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1197.2 854 67.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1196.0 856 66.2
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1193.3 849 66.9
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1191.4 849 66.8
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 851 67.5
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1186.4 853 66.5
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1183.3 850 65.5
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1182.5 859 66.4
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 853 65.2
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1175.6 858 65.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1175.2 855 65.5
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1174.1 852 65.6
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1173.7 860 66.3
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1165.2 884 63.6
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1163.3 870 65.6
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 849 65.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1161.7 809 68.5
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1160.6 854 64.6
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1157.1 853 66.1
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1154.8 856 63.6
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1154.4 888 63.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1149.4 824 66.4
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1149.0 860 65.0
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1147.5 808 67.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1141.3 857 63.1
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1137.5 970 58.8
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1136.7 812 66.6
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1125.5 851 62.5
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1125.5 859 63.3
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1125.2 850 63.2
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1123.2 851 62.7
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1121.3 860 62.9
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1120.9 860 63.3
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1119.0 851 62.9
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 850 62.6
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1113.2 848 62.5
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1111.3 855 63.0
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1107.4 849 62.7
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1103.6 850 61.6
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1102.4 855 62.0
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1099.7 874 60.8
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 853 61.8
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 852 61.9
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1092.4 848 62.0
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1089.3 856 61.6
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1087.0 886 59.6
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1077.0 855 60.7
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 5.8e-312 1074.7 859 60.7
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 5.8e-312 1073.9 859 60.7
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.2e-311 1073.2 873 60.3
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 1.2e-311 1072.8 855 60.7
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 2.0e-310 1068.9 850 61.2
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 3.4e-310 1068.1 856 60.5
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 8.3e-309 1063.5 892 59.2
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.1e-308 1061.2 867 58.1
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 2.0e-307 1058.9 860 59.0
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.5e-305 1052.7 859 58.8
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 4.7e-304 1047.7 779 62.9
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.2e-301 1038.9 856 59.6
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 4.3e-297 1024.6 764 64.7
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.1e-296 1022.3 835 57.7
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.8e-295 1019.2 729 65.8
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.8e-291 1003.8 780 60.5
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.0e-290 1003.4 766 60.1
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 8.6e-290 1000.3 775 59.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 3.6e-288 995.0 770 60.3
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 6.2e-288 994.2 775 59.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 8.1e-288 993.8 776 58.8
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.8e-287 992.6 720 65.1
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 4.9e-285 984.6 774 59.3
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 7.1e-284 980.7 857 57.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 9.2e-284 980.3 773 59.6
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.7e-282 976.1 852 55.9
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 3.0e-282 975.3 783 58.7
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.1e-281 973.4 850 56.0
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 4.3e-281 971.5 806 57.8
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.6e-280 969.5 773 58.9
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.6e-280 968.4 850 55.5
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 7.6e-278 960.7 785 58.0
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 4.2e-276 954.9 908 52.6
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.4e-271 939.9 775 57.9
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.4e-268 929.9 728 60.2
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.2e-259 900.2 858 53.3
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.4e-255 886.7 799 54.6
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 2.1e-248 862.8 857 50.5
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 2.9e-245 852.4 654 62.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.9e-241 839.7 782 52.3
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 5.1e-234 815.1 848 47.6
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.5e-233 812.8 599 65.4
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.3e-232 810.4 809 49.8
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 3.7e-232 808.9 812 50.4
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.6e-219 766.9 875 46.7
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.6e-217 759.6 629 59.0
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.1e-215 752.3 534 68.9
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.9e-213 746.1 477 74.6
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-212 743.8 438 79.7
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 5.0e-205 718.8 778 48.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 5.0e-205 718.8 432 79.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.4e-201 706.1 656 54.3
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 5.9e-198 695.3 471 68.4
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.0e-197 694.5 406 82.5
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.8e-197 692.6 434 72.8
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 7.5e-193 678.3 667 50.2
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.2e-169 601.3 670 48.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 3.5e-166 589.7 579 50.6
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 3.1e-162 576.6 899 37.9
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.0e-149 535.0 324 76.2
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 9.3e-143 511.9 582 48.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 3.7e-131 473.4 778 37.9
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.8e-123 447.2 434 54.8
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 5.3e-122 443.0 268 76.9
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.8e-109 401.4 338 56.2
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.5e-103 381.7 395 52.4
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.7e-101 372.9 407 50.9
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 4.8e-99 366.7 399 49.9
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 4.0e-85 320.5 244 61.9
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.2e-76 292.4 526 34.0
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 2.7e-73 281.2 830 27.8
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.2e-70 270.0 167 73.1
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 8.6e-64 249.6 202 58.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 3.4e-60 237.7 204 55.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 4.4e-52 210.7 140 67.9
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 4.0e-45 187.6 117 70.9
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.0e-44 185.3 194 50.5
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 6.4e-43 180.3 100 78.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.1e-31 142.9 198 39.9
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 2.4e-29 135.2 82 70.7
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.2e-28 132.9 84 77.4
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 4.6e-25 120.9 93 63.4
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.4e-21 109.4 69 73.9
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.5e-20 105.9 122 45.1
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.4e-18 99.4 96 55.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.5e-18 98.6 84 54.8
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 4.2e-18 97.8 59 83.1
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 2.7e-17 95.1 74 70.3
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 8.7e-16 90.1 82 50.0
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.6e-14 85.9 61 67.2
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 6.3e-14 84.0 45 82.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.9e-12 77.4 41 73.2
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.7e-11 75.9 44 77.3
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.7e-11 75.9 40 75.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.4e-10 72.8 96 40.6
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.9e-10 72.4 94 41.5


User provided reference genes

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