Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 1.7e-149 532.7 289 100.0
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 5.5e-95 351.7 297 71.7
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 6.1e-38 162.2 322 42.9
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 1.3e-24 117.9 156 43.6
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 5.6e-23 112.5 135 49.6
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 5.6e-23 112.5 135 49.6
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 1.3e-19 101.3 140 42.1
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 4.1e-18 96.3 131 42.0
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 4.1e-18 96.3 131 42.0
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 1.0e-16 91.7 57 66.7
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 3.9e-16 89.7 197 35.5
Lalb_Chr09g0321241 Lupinus albus HOM05D010736 ORTHO05D010111 8.6e-16 88.6 185 37.8
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 1.1e-15 88.2 123 40.7
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 1.9e-15 87.4 170 37.1
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 2.5e-15 87.0 106 47.2
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 2.5e-15 87.0 55 65.5
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 1.8e-13 80.9 52 65.4
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 1.1e-10 71.6 128 34.4
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 1.9e-10 70.9 128 35.2
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 2.4e-10 70.5 161 32.3
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 2.4e-10 70.5 137 33.6
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 5.4e-10 69.3 133 33.8
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 7.1e-10 68.9 145 33.8
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 9.3e-10 68.6 143 35.7
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 1.2e-09 68.2 149 32.2
QL06p052831 Quercus lobata HOM05D008569 ORTHO05D010111 1.2e-09 68.2 61 47.5
Cpa.g.c32926 Carica papaya HOM05D008569 ORTHO05D010111 2.1e-09 67.4 141 29.8
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 2.7e-09 67.0 69 44.9
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 3.5e-09 66.6 134 32.1
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 3.5e-09 66.6 134 32.1
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 4.6e-09 66.2 55 47.3
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 4.6e-09 66.2 55 47.3
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 4.6e-09 66.2 128 35.2
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 6.0e-09 65.9 54 48.1
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 6.0e-09 65.9 54 48.1
Lalb_Chr05g0211881 Lupinus albus HOM05D010736 ORTHO05D010111 6.0e-09 65.9 98 42.9
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 6.0e-09 65.9 54 48.1
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 1.0e-08 65.1 75 38.7
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 1.3e-08 64.7 61 45.9
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 1.7e-08 64.3 145 31.7
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 2.3e-08 63.9 128 33.6
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 3.0e-08 63.5 72 34.7
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 6.6e-08 62.4 121 33.1
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 6.6e-08 62.4 121 33.1
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 8.7e-08 62.0 133 36.8
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 8.7e-08 62.0 54 44.4
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 8.7e-08 62.0 54 44.4
TAR636G0894 Trochodendron aralioides HOM05D008543 ORTHO05D000630 1.5e-07 61.2 57 49.1
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 1.9e-07 60.8 55 47.3
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 1.9e-07 60.8 123 31.7
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 2.5e-07 60.5 128 30.5
Prupe.6G035400 Prunus persica HOM05D000174 ORTHO05D000630 2.5e-07 60.5 77 42.9
Actinidia30352 Actinidia chinensis HOM05D008543 ORTHO05D000630 3.3e-07 60.1 104 30.8
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 4.3e-07 59.7 65 44.6
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 4.3e-07 59.7 125 32.8
Lj8C183G11 Lonicera japonica HOM05D000174 ORTHO05D000630 5.6e-07 59.3 37 64.9
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 7.3e-07 58.9 119 34.5
MD11G1046000 Malus domestica HOM05D000174 ORTHO05D000630 7.3e-07 58.9 94 37.2
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 9.6e-07 58.5 113 31.9
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 9.6e-07 58.5 128 30.5
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 1.3e-06 58.2 54 42.6
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 1.3e-06 58.2 65 43.1
Dinv40916 Davidia involucrata HOM05D008543 ORTHO05D000630 2.8e-06 57.0 51 45.1
Lsat_1_v5_gn_9_88600 Lactuca sativa HOM05D000174 ORTHO05D000630 2.8e-06 57.0 59 47.5
BcaB01g03035 Brassica carinata HOM05D012084 ORTHO05D000630 3.6e-06 56.6 54 46.3
CSS0027823 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D001526 3.6e-06 56.6 96 36.5
Lsat_1_v5_gn_3_48800 Lactuca sativa HOM05D000174 ORTHO05D001526 3.6e-06 56.6 71 40.8
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 4.8e-06 56.2 57 43.9
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 4.8e-06 56.2 51 47.1
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 6.2e-06 55.8 97 37.1
FAN20G1232 Fragaria x ananassa HOM05D000174 ORTHO05D001526 6.2e-06 55.8 64 43.8
QL01p020579 Quercus lobata HOM05D008543 ORTHO05D000630 6.2e-06 55.8 46 54.3
Zm00001eb199290 Zea mays HOM05D000174 ORTHO05D001526 6.2e-06 55.8 44 54.5
CsaV3_6G010150 Cucumis sativus L. HOM05D000174 ORTHO05D000198 8.1e-06 55.5 104 34.6
MD03G1043000 Malus domestica HOM05D000174 ORTHO05D000630 8.1e-06 55.5 62 41.9
Nn6g31718 Nelumbo nucifera HOM05D000174 ORTHO05D001526 8.1e-06 55.5 58 41.4
Nitab4.5_0000205g0040 Nicotiana tabacum HOM05D059491 ORTHO05D000630 8.1e-06 55.5 54 48.1
Potri.009G166200 Populus trichocarpa HOM05D000174 ORTHO05D001526 8.1e-06 55.5 63 44.4
Rhsim08G0027800 Rhododendron simsii HOM05D035560 ORTHO05D026372 8.1e-06 55.5 113 34.5
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 8.1e-06 55.5 64 46.9


User provided reference genes

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