Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 0.0e+00 1944.9 966 100.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 0.0e+00 1786.5 966 92.7
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1657.9 969 85.6
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 0.0e+00 1647.5 969 85.3
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 0.0e+00 1473.4 971 77.3
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 0.0e+00 1468.0 969 77.1
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1446.8 969 75.4
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 0.0e+00 1434.5 935 77.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 0.0e+00 1417.1 955 74.3
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 0.0e+00 1386.7 968 73.8
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1361.7 976 72.2
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 0.0e+00 1361.7 976 72.2
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 0.0e+00 1322.4 943 73.1
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1093.2 978 59.8
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1078.9 1008 58.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 3.0e-307 1058.5 972 58.6
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 5.9e-303 1044.3 975 58.2
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.1e-300 1035.8 973 57.8
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 6.3e-297 1024.2 981 57.0
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 2.8e-292 1008.8 967 56.3
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.5e-290 1003.0 980 55.6
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.3e-289 1000.0 968 56.8
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.9e-289 998.0 980 55.2
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 8.3e-289 997.3 975 56.1
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 1.4e-288 996.5 983 55.7
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 7.8e-287 990.7 974 55.9
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.3e-286 989.9 973 56.0
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 3.6e-284 981.9 979 55.2
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 4.0e-283 978.4 975 55.0
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.2e-283 978.0 987 54.3
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 9.8e-282 973.8 976 55.3
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.5e-277 959.1 956 53.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 3.3e-277 958.7 989 53.6
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 5.6e-277 958.0 982 54.4
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 8.1e-276 954.1 957 54.9
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 5.8e-274 948.0 980 53.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 3.7e-273 945.3 913 57.1
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.4e-272 941.4 1013 52.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 5.4e-272 941.4 901 55.9
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 3.9e-270 935.3 935 54.7
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.1e-269 933.7 973 54.3
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.5e-269 933.3 985 53.5
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 5.6e-269 931.4 971 52.9
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.2e-268 927.9 973 54.0
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.1e-267 927.2 985 53.7
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.4e-267 926.8 984 51.8
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.0e-266 922.9 973 53.8
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 3.4e-266 922.2 967 53.3
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.2e-264 915.6 947 54.4
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.7e-262 909.8 981 51.4
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.5e-261 906.7 948 53.3
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.5e-261 906.0 971 52.2
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.3e-261 905.2 979 51.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 9.6e-261 904.0 971 51.2
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.2e-260 901.4 1067 48.7
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.1e-259 899.0 967 50.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.6e-258 896.0 958 51.3
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.3e-257 893.6 948 52.4
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 1.7e-257 893.3 968 50.9
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.9e-256 889.8 930 52.9
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 4.6e-255 885.2 978 51.6
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 4.6e-255 885.2 976 51.2
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 8.7e-254 880.9 979 50.9
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 5.6e-253 878.2 956 51.8
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.6e-252 876.7 961 50.1
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.8e-251 873.2 957 49.2
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.8e-251 873.2 839 57.4
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 2.4e-251 872.8 971 51.2
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 9.0e-251 870.9 958 49.6
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.0e-250 869.8 976 50.6
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 4.5e-250 868.6 952 49.8
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.9e-249 865.9 955 49.9
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.4e-248 862.8 971 51.5
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.4e-248 861.7 976 50.3
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 3.5e-247 859.0 955 49.4
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 2.8e-244 849.4 1004 49.5
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.8e-244 848.6 976 48.5
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 6.2e-244 848.2 1010 49.5
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 3.1e-243 845.9 934 49.6
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 2.6e-242 842.8 976 50.0
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.7e-241 840.1 687 62.0
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 6.0e-239 831.6 935 48.9
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.3e-238 830.5 965 47.6
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.3e-238 829.7 978 49.2
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.4e-235 820.5 824 53.9
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.4e-232 810.4 933 49.2
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 5.1e-230 802.0 698 58.6
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 8.7e-230 801.2 894 50.6
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 8.7e-230 801.2 659 61.9
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 2.5e-229 799.7 969 47.3
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 2.4e-227 793.1 969 46.6
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.2e-226 790.8 990 46.4
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.5e-226 790.4 969 47.3
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.1e-224 784.3 1010 45.8
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 2.5e-224 783.1 988 45.9
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 3.9e-222 775.8 968 46.7
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 3.3e-221 772.7 921 47.0
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 2.6e-213 746.5 681 56.4
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 8.8e-206 721.5 987 42.8
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 8.8e-206 721.5 802 50.2
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.2e-204 716.8 992 43.3
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 8.2e-204 714.9 790 49.5
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.6e-202 709.9 613 60.5
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 2.6e-197 693.3 985 42.9
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 3.5e-194 682.9 932 42.4
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.2e-189 667.9 948 43.8
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.5e-189 667.5 971 41.2
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 6.3e-188 662.1 671 50.8
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 7.5e-181 638.6 457 70.7
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.1e-175 619.0 725 49.8
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 9.8e-173 611.7 440 68.2
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 6.2e-167 592.4 657 48.9
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 5.2e-166 589.3 728 44.8
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.3e-148 531.6 953 37.6
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.2e-146 525.0 619 46.0
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 4.6e-146 523.1 944 38.1
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 5.1e-145 519.6 855 38.6
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 9.0e-142 508.8 448 53.8
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 4.4e-141 506.5 674 44.4
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.7e-137 492.3 709 42.3
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.6e-130 469.9 749 40.1
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.2e-117 428.7 671 39.5
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 3.0e-113 414.1 800 36.0
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.8e-111 407.5 522 48.7
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 2.8e-103 380.9 279 70.3
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 5.9e-101 373.2 286 64.3
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.0e-96 358.2 539 42.3
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.1e-91 342.4 433 45.3
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 4.7e-90 337.0 521 39.3
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.6e-82 310.8 195 76.9
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.2e-74 285.8 236 62.3
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 8.0e-74 283.1 209 69.4
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.6e-68 263.1 177 72.3
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 5.2e-65 253.8 243 57.2
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.5e-56 225.7 158 72.2
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.5e-56 225.7 170 68.8
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 5.0e-52 210.7 241 43.6
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.3e-51 207.6 132 76.5
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 2.0e-48 198.7 277 45.5
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 3.4e-48 198.0 174 55.7
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.7e-44 185.7 114 73.7
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 6.2e-34 150.6 527 26.4
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 3.4e-32 144.8 312 33.0
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 5.1e-28 131.0 198 41.4
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 5.1e-28 131.0 80 77.5
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 8.7e-20 103.6 543 23.9
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 1.5e-19 102.8 297 32.7
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 7.6e-16 90.5 321 27.7
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.4e-14 85.5 43 90.7
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.0e-12 80.1 93 41.9
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 5.1e-12 77.8 549 24.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.4e-09 68.9 47 66.0


User provided reference genes

Program Settings