Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 6.3e-100 367.5 188 100.0
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 3.7e-60 235.3 192 70.8
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 2.0e-50 203.0 164 67.1
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 3.9e-41 172.2 156 60.3
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 6.6e-41 171.4 189 57.1
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.1e-40 170.6 165 61.2
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.3e-40 168.7 185 54.6
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.1e-38 164.1 203 50.7
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.8e-38 163.3 158 60.8
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 3.1e-38 162.5 175 56.0
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 5.2e-38 161.8 209 50.7
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 5.2e-38 161.8 181 55.8
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.2e-37 160.6 164 55.5
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.6e-37 159.5 157 58.6
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.6e-37 159.5 164 52.4
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 2.6e-37 159.5 153 58.8
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.6e-37 159.5 148 59.5
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 3.4e-37 159.1 208 52.4
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 4.4e-37 158.7 204 50.5
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 5.8e-37 158.3 157 59.9
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 5.8e-37 158.3 180 52.2
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 7.5e-37 157.9 113 69.0
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 7.5e-37 157.9 143 62.2
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 1.3e-36 157.1 180 53.9
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.3e-36 157.1 192 52.6
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.3e-36 157.1 121 65.3
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.2e-36 156.4 125 64.8
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.9e-36 156.0 161 59.0
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 3.7e-36 155.6 187 54.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 3.7e-36 155.6 192 52.1
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 4.9e-36 155.2 111 66.7
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 6.4e-36 154.8 206 50.0
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 8.3e-36 154.5 186 49.5
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 8.3e-36 154.5 192 51.6
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 8.3e-36 154.5 112 69.6
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 8.3e-36 154.5 112 69.6
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 1.1e-35 154.1 159 56.6
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.9e-35 153.3 112 67.9
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.9e-35 153.3 112 67.9
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.2e-35 152.5 149 58.4
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 3.2e-35 152.5 165 56.4
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 4.1e-35 152.1 112 70.5
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 5.4e-35 151.8 149 56.4
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 9.2e-35 151.0 193 48.7
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 9.2e-35 151.0 149 57.7
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.2e-35 151.0 149 57.7
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.2e-35 151.0 149 57.7
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-34 150.6 112 67.0
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 1.2e-34 150.6 112 67.0
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 2.1e-34 149.8 149 57.7
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 3.5e-34 149.1 202 49.5
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.5e-34 149.1 149 56.4
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 4.6e-34 148.7 191 48.2
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 4.6e-34 148.7 167 51.5
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 6.0e-34 148.3 111 67.6
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 6.0e-34 148.3 111 66.7
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 1.3e-33 147.1 211 46.9
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.3e-33 146.4 110 67.3
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 2.3e-33 146.4 110 67.3
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.3e-33 146.4 110 67.3
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 3.0e-33 146.0 109 67.9
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 3.0e-33 146.0 199 44.7
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 3.9e-33 145.6 140 57.1
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 5.1e-33 145.2 106 67.9
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 5.1e-33 145.2 106 67.9
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 5.1e-33 145.2 112 66.1
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 4.3e-32 142.1 108 65.7
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 5.6e-32 141.7 108 63.0
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 7.3e-32 141.4 114 64.0
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.6e-31 140.2 193 50.8
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.6e-31 140.2 171 48.0
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.6e-31 139.0 202 43.1
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.4e-30 137.1 89 70.8
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.8e-30 136.7 202 42.1
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.4e-30 136.3 201 42.3
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 3.1e-30 136.0 153 52.9
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 4.0e-30 135.6 162 51.9
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 3.4e-29 132.5 88 73.9
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 3.8e-28 129.0 205 42.0
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 7.1e-27 124.8 245 39.2
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.7e-26 122.9 189 46.0
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.3e-25 119.8 216 40.3
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.1e-24 117.5 162 48.1
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 1.1e-24 117.5 87 65.5
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.9e-24 116.7 99 61.6
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 2.5e-24 116.3 96 57.3
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 5.6e-24 115.2 98 63.3
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 8.1e-23 111.3 73 76.7
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.5e-21 107.1 141 45.4
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 3.4e-21 105.9 164 42.7
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 9.9e-21 104.4 89 60.7
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 9.9e-21 104.4 98 55.1
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.9e-20 102.8 120 49.2
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 2.9e-20 102.8 100 53.0
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.9e-20 102.8 98 54.1
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.8e-20 102.4 89 59.6
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 3.8e-20 102.4 89 59.6
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.9e-20 102.1 158 41.1
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 6.4e-20 101.7 74 66.2
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 8.4e-20 101.3 120 50.8
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 8.4e-20 101.3 108 50.0
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 1.1e-19 100.9 111 48.6
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.1e-19 100.9 102 53.9
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 1.9e-19 100.1 124 50.8
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 3.2e-19 99.4 99 55.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 3.2e-19 99.4 158 40.5
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 4.2e-19 99.0 98 55.1
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 5.4e-19 98.6 146 40.4
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 7.1e-19 98.2 89 57.3
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 7.1e-19 98.2 93 53.8
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 9.3e-19 97.8 85 57.6
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.1e-18 96.7 131 44.3
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 2.7e-18 96.3 125 47.2
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.7e-18 96.3 70 74.3
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 2.7e-18 96.3 125 47.2
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.5e-18 95.9 84 57.1
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 3.5e-18 95.9 121 48.8
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 6.0e-18 95.1 146 41.1
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 6.0e-18 95.1 146 41.1
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 7.8e-18 94.7 91 51.6
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 1.0e-17 94.4 154 39.6
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.7e-17 93.6 59 78.0
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.7e-17 93.6 120 47.5
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.7e-17 93.6 102 52.0
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 3.0e-17 92.8 98 51.0
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 3.9e-17 92.4 86 57.0
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 3.9e-17 92.4 125 50.4
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 5.1e-17 92.0 89 51.7
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 5.1e-17 92.0 166 42.2
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 5.1e-17 92.0 160 39.4
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 6.6e-17 91.7 98 50.0
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 6.6e-17 91.7 91 50.5
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-16 90.9 87 55.2
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.5e-16 90.5 126 48.4
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 1.5e-16 90.5 98 46.9
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 1.9e-16 90.1 170 37.6
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.9e-16 90.1 86 53.5
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.5e-16 89.7 85 54.1
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 2.5e-16 89.7 122 47.5
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 4.3e-16 89.0 109 53.2
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 4.3e-16 89.0 121 46.3
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 5.6e-16 88.6 127 48.8
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 9.6e-16 87.8 85 52.9
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 9.6e-16 87.8 187 34.8
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.3e-15 87.4 98 50.0
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.3e-15 87.4 103 50.5
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 1.3e-15 87.4 108 48.1
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 2.1e-15 86.7 89 51.7
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.1e-14 82.8 113 45.1
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.2e-13 80.9 98 45.9
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 3.8e-12 75.9 71 56.3
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 8.4e-12 74.7 91 47.3
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 5.4e-11 72.0 117 33.3
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.0e-09 67.8 100 40.0
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 1.0e-09 67.8 117 38.5
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 2.3e-09 66.6 115 46.1
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 2.3e-09 66.6 90 53.3
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 7.4e-08 61.6 52 55.8
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.6e-07 60.5 63 49.2
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 4.0e-06 55.8 51 52.9
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 5.3e-06 55.5 92 41.3
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 5.3e-06 55.5 89 38.2


User provided reference genes

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