Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G006200 Phaseolus vulgaris HOM05D006113 ORTHO05D007828 4.3e-267 924.1 467 100.0
VMungo1215G1026 Vigna mungo HOM05D006113 ORTHO05D007828 2.5e-230 802.0 453 88.7
Glyma.11G042400 Glycine max HOM05D006113 ORTHO05D007828 2.4e-193 679.1 475 75.6
arahy.Tifrunner.gnm1.ann1.C9Y7N1 Arachis hypogaea HOM05D006113 ORTHO05D007828 4.6e-168 595.1 442 69.5
arahy.Tifrunner.gnm1.ann1.LSM77P Arachis hypogaea HOM05D006113 ORTHO05D007828 4.6e-168 595.1 442 69.5
Lalb_Chr05g0214021 Lupinus albus HOM05D006113 ORTHO05D007828 1.3e-167 593.6 495 66.9
Lj2g0019507 Lotus japonicus HOM05D006113 ORTHO05D007828 5.1e-167 591.7 494 65.8
Medtr5g014290 Medicago truncatula HOM05D006113 ORTHO05D007828 2.3e-159 566.2 490 62.4
CANSAT21G0754 Cannabis sativa HOM05D006113 ORTHO05D007828 1.9e-150 536.6 443 61.6
CSS0019238 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 4.3e-150 535.4 441 61.5
CSS0023186 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 4.3e-150 535.4 441 61.5
Prupe.1G552500 Prunus persica HOM05D006113 ORTHO05D007828 5.6e-150 535.0 441 61.2
CsaV3_3G049370 Cucumis sativus L. HOM05D006113 ORTHO05D007828 9.6e-150 534.3 444 61.5
MELO3C003389.2 Cucumis melo HOM05D006113 ORTHO05D007828 2.1e-149 533.1 442 61.8
MD09G1232600 Malus domestica HOM05D006113 ORTHO05D007828 1.1e-148 530.8 441 60.1
CiPaw.11G091200 Carya illinoinensis HOM05D006113 ORTHO05D007828 2.4e-148 529.6 442 60.6
CSS0010269 Camellia sinensis var. sinensis HOM05D006113 ORTHO05D007828 5.3e-148 528.5 444 60.8
Cfa012411 Carpinus fangiana HOM05D006113 ORTHO05D007828 1.2e-147 527.3 441 61.0
Dinv28932 Davidia involucrata HOM05D006113 ORTHO05D007828 2.0e-147 526.6 454 60.6
Sed0027774 Sechium edule HOM05D006113 ORTHO05D007828 2.0e-147 526.6 444 61.0
Hund14417 Selenicereus undatus HOM05D006113 ORTHO05D007828 2.6e-147 526.2 443 60.7
Cc08_g02430 Coffea canephora HOM05D006113 ORTHO05D007828 5.8e-147 525.0 464 58.2
Potri.003G089700 Populus trichocarpa HOM05D006113 ORTHO05D007828 5.8e-147 525.0 442 60.6
Eucgr.E00301 Eucalyptus grandis HOM05D006113 ORTHO05D007828 8.4e-146 521.2 444 60.1
Gohir.D08G178600 Gossypium hirsutum HOM05D006113 ORTHO05D007828 1.9e-145 520.0 439 60.6
GSVIVG01013180001 Vitis vinifera HOM05D006113 ORTHO05D007828 5.5e-145 518.5 461 58.6
HanXRQChr06g0167341 Helianthus annuus HOM05D006113 ORTHO05D007828 7.1e-145 518.1 476 56.7
COL.COLO4_17073 Corchorus olitorius HOM05D006113 ORTHO05D007828 9.3e-145 517.7 439 59.9
Gorai.004G186900 Gossypium raimondii HOM05D006113 ORTHO05D007828 9.3e-145 517.7 439 60.4
Rhsim07G0124800 Rhododendron simsii HOM05D006113 ORTHO05D007828 9.3e-145 517.7 443 60.7
Ca_24644_v3 Cicer arietinum L. HOM05D006113 ORTHO05D007828 2.1e-144 516.5 342 77.8
Ciclev10031360m.g Citrus clementina HOM05D006113 ORTHO05D007828 2.1e-144 516.5 439 60.6
Lsat_1_v5_gn_3_16601 Lactuca sativa HOM05D006113 ORTHO05D007828 4.6e-144 515.4 443 59.1
Ah.12g054610 Amaranthus hybridus HOM05D006113 ORTHO05D007828 1.3e-143 513.8 446 58.7
Potri.001G144500 Populus trichocarpa HOM05D006113 ORTHO05D007828 1.8e-143 513.5 439 59.9
vmacro14161 Vaccinium macrocarpon HOM05D006113 ORTHO05D007828 1.8e-143 513.5 440 59.5
Gohir.A08G158300 Gossypium hirsutum HOM05D006113 ORTHO05D007828 3.0e-143 512.7 439 60.4
HanXRQChr17g0535731 Helianthus annuus HOM05D006113 ORTHO05D007828 3.0e-143 512.7 445 58.9
Sopen08g002980 Solanum pennellii HOM05D006113 ORTHO05D007828 3.0e-143 512.7 440 59.5
EL10Ac1g02288 Beta vulgaris HOM05D006113 ORTHO05D007828 5.1e-143 511.9 441 58.3
Oeu062745.2 Olea europaea HOM05D006113 ORTHO05D007828 6.7e-143 511.5 462 57.6
Duzib205G1867 Durio zibethinus HOM05D006113 ORTHO05D007828 1.9e-142 510.0 441 60.3
Nitab4.5_0000535g0010 Nicotiana tabacum HOM05D006113 ORTHO05D007828 1.9e-142 510.0 452 58.0
PGSC0003DMG400020501 Solanum tuberosum HOM05D006113 ORTHO05D007828 3.3e-142 509.2 443 58.5
Thecc.03G231000 Theobroma cacao HOM05D006113 ORTHO05D007828 4.3e-142 508.8 450 58.0
Peaxi162Scf00102g00639 Petunia axillaris HOM05D006113 ORTHO05D007828 5.7e-142 508.4 447 59.1
RcHm_v2.0_Chr6g0269051 Rosa chinensis HOM05D006113 ORTHO05D007828 5.7e-142 508.4 472 56.6
Sabra01G0112900 Salix brachista HOM05D006113 ORTHO05D007828 5.7e-142 508.4 439 59.7
CAN.G845.35 Capsicum annuum HOM05D006113 ORTHO05D007828 2.8e-141 506.1 459 57.3
TWI60G1370 Tripterygium wilfordii HOM05D006113 ORTHO05D007828 2.8e-141 506.1 440 59.1
Atru.chr6.1754 Acer truncatum HOM05D006113 ORTHO05D007828 8.2e-141 504.6 436 61.0
FvH4_6g31710 Fragaria vesca HOM05D006113 ORTHO05D007828 1.1e-140 504.2 438 58.9
Manes.05G117026 Manihot esculenta HOM05D006113 ORTHO05D007828 1.4e-140 503.8 443 58.7
TWI81G0082 Tripterygium wilfordii HOM05D006113 ORTHO05D007828 2.4e-140 503.1 440 59.1
PGR042G1735 Punica granatum HOM05D006113 ORTHO05D007828 5.3e-140 501.9 447 58.8
MSTRG.12007 Avicennia marina HOM05D006113 ORTHO05D007828 9.0e-140 501.1 446 58.3
SGA_v2.0_scaffold385G50460 Striga asiatica HOM05D006113 ORTHO05D007828 1.5e-139 500.4 441 58.5
DCAR_008285 Daucus carota HOM05D006113 ORTHO05D007828 4.5e-139 498.8 482 55.6
Sc22g0001480 Simmondsia chinensis HOM05D006113 ORTHO05D007828 4.5e-139 498.8 443 58.7
ECA246G3200 Erigeron canadensis HOM05D006113 ORTHO05D007828 1.0e-138 497.7 472 55.1
Haze_08267 Corylus avellana HOM05D006113 ORTHO05D007828 3.8e-138 495.7 497 53.9
FAN05G0306 Fragaria x ananassa HOM05D006113 ORTHO05D007828 1.1e-137 494.2 440 57.7
FAN09G0007 Fragaria x ananassa HOM05D006113 ORTHO05D007828 5.5e-137 491.9 451 56.3
AUR62007248 Chenopodium quinoa HOM05D006113 ORTHO05D007828 7.1e-137 491.5 420 58.3
FAN02G2000 Fragaria x ananassa HOM05D006113 ORTHO05D007828 7.1e-137 491.5 438 57.8
A05p24790 Brassica napus HOM05D006113 ORTHO05D007828 3.5e-136 489.2 439 57.9
BraA05t21362Z Brassica rapa HOM05D006113 ORTHO05D007828 3.5e-136 489.2 439 57.9
SalBow1G7584 Salvia bowleyana HOM05D006113 ORTHO05D007828 1.3e-135 487.3 444 57.7
Migut.E01131 Erythranthe guttata HOM05D006113 ORTHO05D007828 6.7e-135 485.0 451 56.3
Aa31LG2G13450 Aethionema arabicum HOM05D006113 ORTHO05D007828 1.1e-134 484.2 442 56.8
AT1G32500 Arabidopsis thaliana HOM05D006113 ORTHO05D007828 1.1e-134 484.2 474 53.8
BolC5t32582H Brassica oleracea HOM05D006113 ORTHO05D007828 1.9e-134 483.4 444 57.0
Thhalv10007401m.g Eutrema salsugineum HOM05D006113 ORTHO05D007828 9.7e-134 481.1 442 56.6
Nitab4.5_0000804g0060 Nicotiana tabacum HOM05D006113 ORTHO05D007828 9.7e-134 481.1 485 53.2
BcaB03g13726 Brassica carinata HOM05D006113 ORTHO05D007828 1.3e-133 480.7 441 56.9
BcaC05g27850 Brassica carinata HOM05D006113 ORTHO05D007828 2.2e-133 479.9 444 56.3
C05p38480 Brassica napus HOM05D006113 ORTHO05D007828 2.2e-133 479.9 444 56.3
Carub.0001s3091 Capsella rubella HOM05D006113 ORTHO05D007828 2.2e-133 479.9 439 56.3
THA.LOC104807962 Tarenaya hassleriana HOM05D006113 ORTHO05D007828 3.7e-133 479.2 443 55.3
QL12p006235 Quercus lobata HOM05D006113 ORTHO05D007828 8.2e-133 478.0 557 47.9
AL1G46750 Arabidopsis lyrata HOM05D006113 ORTHO05D007828 4.1e-132 475.7 475 53.5
MBI18_g17018_MAGBIO Magnolia biondii HOM05D006113 ORTHO05D007828 5.3e-132 475.3 444 57.9
unitig_52.g17240 Utricularia gibba HOM05D006113 ORTHO05D007828 1.2e-131 474.2 461 52.5
Aqoxy3G00478 Aquilegia oxysepala HOM05D006113 ORTHO05D007828 2.6e-131 473.0 464 53.7
CARHR031950 Cardamine hirsuta HOM05D006113 ORTHO05D007828 4.5e-131 472.2 457 54.3
Sp1g28400 Schrenkiella parvula HOM05D006113 ORTHO05D007828 8.5e-130 468.0 450 54.7
Lj8A291G57 Lonicera japonica HOM05D006113 ORTHO05D007828 9.4e-129 464.5 411 58.6
THA.LOC104814434 Tarenaya hassleriana HOM05D006113 ORTHO05D007828 1.4e-127 460.7 465 53.3
PSO017G4443 Papaver somniferum HOM05D006113 ORTHO05D007828 2.6e-123 446.4 503 47.5
PSO478G3605 Papaver somniferum HOM05D006113 ORTHO05D007828 5.9e-123 445.3 504 47.8
HPP92_003349 Vanilla planifolia HOM05D006113 ORTHO05D007828 3.6e-120 436.0 437 54.0
Solyc08g007010.4 Solanum lycopersicum HOM05D006113 ORTHO05D007828 6.1e-120 435.3 341 62.5
Glyma.01G199500 Glycine max HOM05D006113 ORTHO05D007828 1.1e-116 424.5 315 72.7
SEGI_13135 Sequoiadendron giganteum HOM05D006113 ORTHO05D007828 6.1e-112 408.7 442 50.5
ClCG09G012180 Citrullus lanatus HOM05D006113 ORTHO05D007828 4.7e-104 382.5 343 58.0
Psat2g173560 Pisum sativum HOM05D006113 ORTHO05D007828 2.3e-103 380.2 390 55.4
Mapoly0097s0089 Marchantia polymorpha HOM05D006113 ORTHO05D007828 2.6e-102 376.7 445 46.5
Zm00001eb335220 Zea mays HOM05D006113 ORTHO05D007828 4.8e-101 372.5 441 49.0
Pp3c12_11290 Physcomitrium patens HOM05D006113 ORTHO05D007828 2.0e-94 350.5 453 45.3
Nn3g17324 Nelumbo nucifera HOM05D006113 ORTHO05D007828 2.6e-94 350.1 343 53.4
TPR.G7828 Trifolium pratense HOM05D006113 ORTHO05D007828 2.6e-94 350.1 191 90.6
SMO356G0179 Selaginella moellendorffii HOM05D006113 ORTHO05D007828 1.7e-93 347.4 468 43.4
Os01g0127300 Oryza sativa ssp. japonica HOM05D006113 ORTHO05D007828 3.7e-93 346.3 440 45.9
PSO478G2563 Papaver somniferum HOM05D006113 ORTHO05D007828 2.7e-91 340.1 458 42.1
GSVIVG01015822001 Vitis vinifera HOM05D006113 ORTHO05D007828 7.7e-91 338.6 212 77.8
AagrBONN_evm.TU.Sc2ySwM_228.790 Anthoceros agrestis HOM05D006113 ORTHO05D007828 1.3e-90 337.8 485 42.3
ATR0680G232 Amborella trichopoda HOM05D006113 ORTHO05D007828 9.5e-89 331.6 255 63.1
CBR_g5705 Chara braunii HOM05D006113 ORTHO05D007828 6.8e-87 325.5 303 54.8
CBR_g5706 Chara braunii HOM05D006113 ORTHO05D007828 3.4e-86 323.2 303 54.5
AUR62018750 Chenopodium quinoa HOM05D006113 ORTHO05D007828 6.8e-79 298.9 188 74.5
Cpa.g.c32163 Carica papaya HOM05D006113 ORTHO05D007828 1.5e-73 281.2 165 80.6
Cre12.g513950 Chlamydomonas reinhardtii HOM05D006113 ORTHO05D007828 1.5e-73 281.2 435 38.9
MCO11G391 Micromonas commoda HOM05D006113 ORTHO05D007828 1.5e-70 271.2 286 48.6
Sed0023119 Sechium edule HOM05D006113 ORTHO05D007828 4.1e-68 263.1 188 67.6
PRCOL_00003470 Prasinoderma coloniale HOM05D006113 ORTHO05D007828 7.8e-67 258.8 437 37.5
TAR371G0010 Trochodendron aralioides HOM05D006113 ORTHO05D007828 4.3e-65 253.1 294 46.6
PSO782G1575 Papaver somniferum HOM05D006113 ORTHO05D007828 3.1e-63 246.9 359 40.7
AUR62018751 Chenopodium quinoa HOM05D006113 ORTHO05D007828 5.6e-57 226.1 256 47.7
TPR.G17447 Trifolium pratense HOM05D006113 ORTHO05D007828 6.2e-56 222.6 258 50.4
Pp3c4_5260 Physcomitrium patens HOM05D006113 ORTHO05D007828 3.2e-52 210.3 424 34.2
Cpa.g.sc90.55 Carica papaya HOM05D006113 ORTHO05D007828 6.0e-51 206.1 262 46.2
QL12p004317 Quercus lobata HOM05D006113 ORTHO05D007828 6.6e-50 202.6 115 83.5
ClCG09G012190 Citrullus lanatus HOM05D006113 ORTHO05D007828 5.8e-38 162.9 106 74.5
TAR371G1082 Trochodendron aralioides HOM05D006113 ORTHO05D007828 1.1e-36 158.7 103 72.8
BcaC05g27849 Brassica carinata HOM05D006113 ORTHO05D007828 1.6e-35 154.8 241 39.8
VMungo0540G2353 Vigna mungo HOM05D006113 ORTHO05D000647 4.3e-25 120.2 70 82.9
MELO3C003388.2 Cucumis melo HOM05D006113 ORTHO05D007828 6.7e-10 69.7 112 42.0
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 9.7e-09 65.9 310 22.9
AUR62019423 Chenopodium quinoa HOM05D006113 ORTHO05D031674 6.3e-08 63.2 71 43.7


User provided reference genes

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