Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 0.0e+00 1547.7 884 100.0
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 0.0e+00 1226.8 890 82.4
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 0.0e+00 1211.8 890 80.3
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 0.0e+00 1111.7 891 72.8
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.1e-307 1058.9 898 71.0
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 4.4e-305 1051.2 913 67.7
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.9e-304 1048.5 906 69.8
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 5.1e-293 1011.1 891 68.7
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 2.2e-280 969.1 889 65.0
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 4.6e-278 961.4 897 64.1
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.2e-270 936.8 894 61.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 7.2e-263 911.0 902 58.0
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 3.6e-262 908.7 906 59.4
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 6.9e-258 894.4 892 59.0
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 3.8e-256 888.6 893 57.7
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 6.1e-254 881.3 922 57.9
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 4.1e-250 868.6 893 57.3
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.0e-248 864.0 904 56.9
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 7.9e-246 854.4 883 57.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.4e-245 853.6 864 59.7
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 2.3e-245 852.8 882 56.9
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 6.7e-245 851.3 898 57.3
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 3.3e-244 849.0 832 60.1
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 7.0e-242 841.3 910 55.2
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.0e-240 837.4 886 56.4
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.3e-240 837.0 888 57.7
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 2.2e-240 836.3 896 56.1
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 2.9e-240 835.9 904 55.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 3.6e-238 828.9 905 56.1
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 8.0e-238 827.8 864 58.0
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.4e-237 827.0 903 54.3
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 4.0e-237 825.5 918 55.8
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.5e-236 823.5 904 55.5
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.4e-234 817.0 901 55.8
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 3.1e-234 815.8 882 56.2
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 5.3e-234 815.1 883 57.0
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.2e-233 813.9 906 56.0
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.7e-232 810.1 877 58.8
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 2.9e-232 809.3 890 57.4
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.5e-231 806.2 877 59.0
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.3e-229 799.7 877 56.6
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 4.0e-229 798.9 910 54.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.8e-227 792.7 901 52.9
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.4e-226 789.6 904 53.7
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.6e-225 786.9 901 54.3
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 3.5e-225 785.8 910 57.1
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.7e-224 783.5 901 56.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 5.0e-224 781.9 874 55.0
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.2e-223 779.2 895 53.2
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.2e-223 778.9 906 53.2
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.4e-221 773.9 917 55.1
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 3.0e-221 772.7 930 54.0
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 3.0e-221 772.7 902 54.5
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 5.2e-221 771.9 903 53.6
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 6.8e-221 771.5 890 52.7
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 2.6e-220 769.6 899 55.3
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.7e-219 765.8 892 52.9
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 3.7e-219 765.8 816 57.1
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 6.3e-219 765.0 918 54.5
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 7.0e-218 761.5 896 52.1
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 2.7e-217 759.6 835 55.3
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 4.5e-217 758.8 911 52.7
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 1.3e-216 757.3 904 53.7
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 5.0e-216 755.4 888 53.2
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.3e-215 752.3 908 52.4
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.6e-215 751.9 892 52.8
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-214 750.4 878 53.2
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 2.8e-214 749.6 881 51.5
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 6.1e-214 748.4 862 53.4
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 2.2e-211 740.0 903 52.0
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 4.9e-211 738.8 817 56.2
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 6.4e-211 738.4 874 52.7
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.6e-209 732.3 892 51.7
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.3e-208 729.9 878 50.2
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 3.0e-208 729.6 898 51.9
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.0e-208 729.6 731 57.2
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.0e-206 721.5 773 55.4
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 1.1e-205 721.1 861 53.2
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.2e-204 717.6 888 52.3
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 9.8e-204 714.5 856 52.6
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 9.8e-204 714.5 815 52.6
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.5e-201 706.1 862 51.5
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.3e-200 703.4 886 51.7
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 3.0e-200 703.0 435 86.4
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 8.6e-200 701.4 890 51.7
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 8.6e-200 701.4 879 52.0
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 8.1e-198 694.9 895 49.8
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.2e-196 691.0 888 51.4
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.7e-192 677.2 851 51.5
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.5e-191 673.3 887 50.2
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 5.2e-189 665.6 882 50.0
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-188 664.1 886 49.4
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.0e-188 663.7 876 46.9
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 7.6e-188 661.8 904 48.1
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 5.4e-186 655.6 858 51.2
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-184 651.0 889 49.6
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-181 641.3 883 49.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 5.2e-181 639.0 752 52.4
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 2.0e-180 637.1 878 46.6
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 3.4e-180 636.3 904 47.9
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 3.4e-180 636.3 884 48.6
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 3.8e-179 632.9 896 47.8
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.2e-178 629.8 881 44.5
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 2.3e-176 623.6 865 47.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.5e-175 620.9 875 47.3
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 4.3e-175 619.4 811 49.8
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.3e-175 618.6 771 51.0
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.5e-172 609.4 913 47.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 5.1e-168 595.9 564 61.0
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 8.1e-166 588.6 874 45.3
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.3e-163 581.3 608 55.8
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 6.4e-163 578.9 873 45.4
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.2e-161 574.7 836 47.8
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.9e-159 567.4 853 46.0
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 5.8e-156 555.8 880 45.0
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 4.3e-151 539.7 651 54.2
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 2.8e-150 537.0 887 43.7
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 4.5e-148 529.6 654 49.4
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.7e-145 520.4 650 52.5
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.1e-141 506.5 1066 37.1
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.7e-121 440.7 407 61.4
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 3.6e-121 440.3 764 42.3
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 3.0e-112 410.6 351 65.2
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.2e-111 408.7 858 38.1
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-110 405.2 450 55.3
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 3.7e-110 403.7 876 34.9
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.8e-101 374.8 206 94.7
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-92 345.1 474 47.0
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 6.8e-88 329.7 909 34.9
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 8.3e-86 322.8 937 34.3
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.1e-85 320.5 279 61.3
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.1e-83 313.5 287 60.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-74 285.8 887 31.6
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.1e-74 285.8 887 31.6
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 8.9e-72 276.2 973 29.3
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 3.8e-70 270.8 246 60.2
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 4.2e-69 267.3 339 46.0
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-62 245.7 361 44.9
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-59 235.7 419 42.0
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 2.3e-59 235.0 408 43.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 3.0e-59 234.6 452 40.0
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.5e-58 232.3 735 30.6
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 7.3e-58 229.9 400 40.5
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 8.1e-57 226.5 400 40.2
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 5.3e-56 223.8 361 42.4
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-53 214.2 399 40.4
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.2e-52 212.6 737 29.2
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-45 189.1 362 38.7
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.5e-44 184.5 175 64.0
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.3e-43 181.8 306 41.2
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.3e-43 181.8 177 56.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.8e-41 174.9 298 39.9
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 3.7e-41 174.5 307 41.0
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 9.0e-40 169.9 155 63.9
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.0e-39 168.7 180 52.8
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-34 152.9 203 46.8
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 3.3e-34 151.4 225 42.7
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.3e-34 151.4 306 42.2
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 2.4e-32 145.2 969 24.1
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-31 142.9 165 52.1
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 5.9e-31 140.6 677 26.6
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-30 139.4 305 36.7
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 8.5e-30 136.7 128 60.2
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.5e-29 135.2 305 35.7
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 2.7e-28 131.7 132 52.3
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 4.3e-26 124.4 299 35.5
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 9.7e-26 123.2 299 35.8
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.0e-22 110.9 817 24.0
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.2e-21 108.2 122 59.0
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.0e-14 86.7 82 58.5
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 4.8e-09 67.8 246 28.5
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 2.4e-08 65.5 92 46.7
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 4.1e-08 64.7 82 51.2
VMungo1383G0427 Vigna mungo HOM05D003461 ORTHO05D007607 2.9e-06 58.5 83 49.4


User provided reference genes

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