Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.7e-169 599.4 319 100.0
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 3.0e-155 552.0 310 89.0
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 2.0e-146 522.7 316 83.5
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 7.5e-146 520.8 316 82.9
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 6.4e-137 491.1 316 74.1
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.7e-134 483.0 316 71.8
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 3.1e-131 472.2 315 71.4
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 4.0e-131 471.9 315 74.3
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 4.0e-131 471.9 316 70.9
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 2.6e-130 469.2 315 71.1
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.0e-126 457.2 316 68.4
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 9.6e-125 450.7 310 69.7
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.2e-124 450.3 311 72.3
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 5.2e-123 444.9 316 66.8
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 5.8e-122 441.4 316 66.5
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 9.9e-122 440.7 310 68.1
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 2.9e-121 439.1 319 65.8
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 3.1e-115 419.1 317 69.4
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 4.0e-115 418.7 321 62.9
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.5e-114 416.8 321 62.6
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.5e-114 416.8 312 66.7
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 7.6e-114 414.5 306 63.7
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.7e-113 413.3 306 63.1
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.9e-113 412.5 306 66.3
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 1.1e-112 410.6 306 67.0
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.6e-111 406.8 313 62.9
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 2.1e-111 406.4 313 62.6
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 2.1e-111 406.4 310 68.4
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.7e-111 406.0 310 62.3
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.0e-110 404.1 312 60.6
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 5.1e-110 401.7 310 60.6
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 6.6e-110 401.4 310 61.6
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 5.6e-109 398.3 312 59.3
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 1.6e-108 396.7 306 62.4
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 2.8e-108 396.0 312 58.7
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.8e-108 396.0 306 65.4
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 8.1e-108 394.4 312 60.3
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 1.1e-107 394.0 306 58.2
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 1.4e-107 393.7 309 59.2
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 1.4e-107 393.7 305 60.3
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 2.4e-107 392.9 306 60.1
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.1e-107 392.5 309 58.9
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 3.1e-107 392.5 310 60.0
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 5.3e-107 391.7 309 61.5
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.2e-106 390.6 306 59.5
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 2.0e-106 389.8 309 58.9
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.0e-106 389.8 309 58.9
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 4.5e-106 388.7 310 60.6
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 5.8e-106 388.3 311 59.5
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 4.9e-105 385.2 309 57.9
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 4.9e-105 385.2 310 59.7
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 7.1e-104 381.3 312 61.5
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.6e-103 380.2 313 59.1
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 4.6e-103 378.6 309 66.0
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 7.9e-103 377.9 311 57.2
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 1.3e-102 377.1 312 59.0
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.3e-102 376.3 314 57.0
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 3.0e-102 375.9 312 58.3
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 8.7e-102 374.4 276 63.8
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 8.7e-102 374.4 311 57.9
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.1e-101 374.0 310 58.4
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.9e-101 373.2 309 64.4
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 2.5e-101 372.9 310 60.6
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.6e-101 371.7 305 57.7
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 5.6e-101 371.7 311 63.3
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 9.6e-101 370.9 310 58.1
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 1.2e-98 364.0 311 60.8
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 1.5e-98 363.6 312 59.3
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.0e-97 360.9 310 54.5
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.3e-97 360.5 307 55.4
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.2e-97 359.8 306 62.4
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 3.8e-97 359.0 307 55.7
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 6.5e-97 358.2 308 64.3
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 8.4e-97 357.8 314 59.9
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 1.4e-96 357.1 311 54.0
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 2.5e-96 356.3 247 68.0
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 5.5e-96 355.1 311 54.0
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 1.2e-95 354.0 314 58.6
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.6e-95 353.6 304 55.3
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 1.6e-95 353.6 310 55.8
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.0e-94 350.9 304 56.2
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 1.0e-94 350.9 305 61.6
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.3e-94 350.5 315 54.9
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.8e-94 350.1 310 54.5
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.0e-94 349.4 311 58.5
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 5.1e-94 348.6 303 54.5
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.5e-93 346.3 311 60.1
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 3.3e-93 345.9 307 53.1
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 2.8e-92 342.8 307 53.4
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.4e-91 340.5 311 51.4
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 2.4e-91 339.7 310 58.4
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 2.4e-91 339.7 300 57.7
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 3.1e-91 339.3 311 52.4
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.1e-91 339.0 310 56.8
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 4.1e-91 339.0 302 57.0
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 4.1e-91 339.0 299 56.9
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.9e-91 338.2 294 57.5
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 9.0e-91 337.8 309 53.7
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.0e-90 336.7 312 58.3
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.0e-90 336.7 309 52.4
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 5.8e-90 335.1 323 55.1
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 5.8e-90 335.1 309 57.6
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 7.6e-90 334.7 323 55.1
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 1.0e-89 334.3 310 58.1
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.0e-89 334.3 309 57.3
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 2.2e-89 333.2 310 58.1
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.9e-89 332.8 306 52.9
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 1.1e-88 330.9 313 52.4
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.1e-88 330.9 310 59.0
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 2.5e-88 329.7 313 52.1
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 2.5e-88 329.7 310 58.7
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 9.3e-88 327.8 305 57.4
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 1.2e-87 327.4 313 51.8
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 2.1e-87 326.6 301 52.5
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 2.7e-87 326.2 310 57.4
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 2.7e-87 326.2 310 57.4
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 1.3e-86 323.9 313 51.4
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 5.1e-86 322.0 311 52.1
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 6.3e-84 315.1 312 54.2
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 6.3e-84 315.1 312 55.4
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 8.2e-84 314.7 312 55.4
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.4e-83 313.9 304 53.9
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.4e-83 313.9 304 54.3
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 6.9e-83 311.6 305 49.5
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 6.9e-83 311.6 304 54.3
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 9.0e-83 311.2 269 55.4
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 5.9e-82 308.5 311 55.9
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 5.9e-82 308.5 311 55.9
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 2.2e-81 306.6 312 54.2
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 3.8e-81 305.8 310 54.2
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 5.0e-81 305.4 214 65.0
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 2.1e-79 300.1 302 56.0
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.5e-77 293.9 291 57.4
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 3.3e-77 292.7 304 48.4
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.2e-73 280.0 236 59.3
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.4e-72 277.3 285 50.5
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 2.6e-66 256.5 236 51.7
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 3.5e-66 256.1 238 48.3
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.9e-64 250.4 305 42.3
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.2e-63 247.7 250 52.0
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.8e-62 241.5 251 52.2
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.0e-61 240.4 250 50.8
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 4.4e-61 239.2 236 56.8
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.4e-61 239.2 251 52.2
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 3.8e-57 226.1 194 53.6
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 8.5e-57 224.9 290 38.3
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.5e-53 214.2 189 51.9
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.4e-53 213.0 283 38.9
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 9.4e-48 194.9 286 35.3
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.4e-46 191.0 137 65.0
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 5.2e-46 189.1 201 45.3
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.8e-46 188.3 177 53.1
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 3.4e-45 186.4 274 33.2
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 3.4e-45 186.4 289 35.6
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 4.1e-43 179.5 285 35.1
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 5.0e-41 172.6 266 40.6
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 5.0e-41 172.6 266 40.6
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.0e-38 162.9 118 65.3
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 2.6e-37 160.2 272 32.7
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 9.8e-37 158.3 289 30.8
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.9e-36 156.8 180 43.9
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.1e-35 154.8 125 60.0
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 7.8e-34 148.7 160 46.2
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 5.8e-29 132.5 164 53.0
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 7.0e-27 125.6 170 34.7
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 5.0e-25 119.4 130 43.8
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 4.4e-21 106.3 231 35.9
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 2.3e-17 94.0 74 56.8
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.5e-16 90.5 103 42.7
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 4.7e-15 86.3 80 47.5
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 5.2e-14 82.8 80 46.2
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.6e-10 71.2 68 47.1
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 7.8e-10 68.9 103 40.8
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 3.0e-09 67.0 58 53.4


User provided reference genes

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