Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 6.8e-75 283.9 140 100.0
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 7.5e-66 253.8 140 86.4
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 2.7e-63 245.4 140 86.4
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 2.8e-60 235.3 140 83.6
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 1.5e-50 203.0 140 69.3
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 1.5e-50 203.0 140 69.3
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 7.6e-50 200.7 141 68.8
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 3.3e-45 185.3 143 66.4
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 3.3e-45 185.3 143 65.0
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 3.1e-43 178.7 145 62.1
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 9.3e-40 167.2 144 59.0
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 6.0e-39 164.5 141 58.9
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 3.9e-38 161.8 140 57.1
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.9e-37 159.5 142 58.5
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 1.1e-35 153.7 143 55.9
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 4.0e-35 151.8 138 55.1
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.2e-34 150.2 140 55.7
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 2.0e-34 149.4 141 56.0
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 2.6e-34 149.1 143 55.2
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 3.4e-34 148.7 140 55.0
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 4.5e-34 148.3 137 55.5
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 4.5e-34 148.3 137 55.5
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 9.9e-34 147.1 141 56.7
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 9.9e-34 147.1 140 56.4
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 1.3e-33 146.7 141 53.9
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 2.2e-33 146.0 141 53.9
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 3.8e-33 145.2 142 57.0
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 4.9e-33 144.8 144 56.2
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 4.9e-33 144.8 140 57.9
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 1.4e-32 143.3 97 68.0
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 2.4e-32 142.5 139 54.7
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 9.3e-32 140.6 136 52.2
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 2.1e-31 139.4 141 53.2
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.7e-31 139.0 136 52.9
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 2.7e-31 139.0 136 52.9
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 3.5e-31 138.7 144 53.5
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 3.5e-31 138.7 142 53.5
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 6.0e-31 137.9 143 54.5
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 1.0e-30 137.1 141 53.9
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 1.8e-30 136.3 139 55.4
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 2.3e-30 136.0 143 53.1
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 3.0e-30 135.6 140 51.4
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 3.0e-30 135.6 136 52.9
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 3.0e-30 135.6 144 56.2
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 3.0e-30 135.6 139 54.0
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 6.7e-30 134.4 141 51.1
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 6.7e-30 134.4 139 52.5
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 8.7e-30 134.0 142 53.5
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.1e-29 133.7 134 51.5
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 1.5e-29 133.3 140 53.6
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 5.6e-29 131.3 137 53.3
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 9.6e-29 130.6 150 51.3
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 1.3e-28 130.2 134 53.7
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.1e-28 129.4 139 51.1
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 2.1e-28 129.4 134 53.0
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 2.8e-28 129.0 165 46.1
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.6e-28 128.6 140 52.9
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 3.6e-28 128.6 139 52.5
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 4.8e-28 128.3 143 50.3
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 1.1e-27 127.1 143 49.7
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 1.1e-27 127.1 140 49.3
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.4e-27 126.7 143 49.7
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 1.4e-27 126.7 140 47.9
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 1.8e-27 126.3 116 56.0
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 2.4e-27 125.9 126 52.4
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 5.3e-27 124.8 135 53.3
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.2e-26 123.6 140 50.0
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 1.2e-26 123.6 141 50.4
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.5e-26 123.2 126 51.6
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 2.6e-26 122.5 136 48.5
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 2.6e-26 122.5 145 49.0
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 2.6e-26 122.5 108 57.4
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 3.4e-26 122.1 143 48.3
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 3.4e-26 122.1 162 48.1
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 3.4e-26 122.1 138 51.4
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 5.8e-26 121.3 141 49.6
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 5.8e-26 121.3 117 53.8
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 7.6e-26 120.9 142 50.7
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 7.6e-26 120.9 142 50.7
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 7.6e-26 120.9 141 52.5
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 9.9e-26 120.6 133 50.4
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 9.9e-26 120.6 133 50.4
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 2.2e-25 119.4 148 49.3
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 2.2e-25 119.4 147 49.0
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 2.9e-25 119.0 144 45.8
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 3.8e-25 118.6 134 48.5
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 8.4e-25 117.5 106 53.8
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 1.1e-24 117.1 143 48.3
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 1.4e-24 116.7 70 67.1
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.4e-24 116.7 143 47.6
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 1.9e-24 116.3 138 47.1
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 3.2e-24 115.5 137 50.4
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 3.2e-24 115.5 143 47.6
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 4.2e-24 115.2 139 46.8
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 5.5e-24 114.8 139 48.2
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 5.5e-24 114.8 79 67.1
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 1.2e-23 113.6 139 50.4
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 2.1e-23 112.8 143 46.2
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 2.7e-23 112.5 95 55.8
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 1.8e-22 109.8 78 62.8
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 1.1e-21 107.1 141 46.1
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 2.5e-21 105.9 140 47.9
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 1.3e-20 103.6 79 60.8
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 1.3e-20 103.6 81 61.7
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.6e-20 103.2 119 47.1
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 1.6e-20 103.2 79 60.8
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 3.7e-20 102.1 100 58.0
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 4.8e-20 101.7 124 46.0
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 1.4e-19 100.1 116 48.3
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 3.1e-19 99.0 77 58.4
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 5.3e-19 98.2 81 60.5
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 6.9e-19 97.8 92 53.3
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 2.2e-17 92.8 136 44.1
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 1.4e-16 90.1 116 45.7
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 1.9e-16 89.7 118 46.6
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 1.6e-15 86.7 88 47.7
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 3.5e-15 85.5 111 45.0
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 4.6e-15 85.1 118 44.1
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 1.3e-14 83.6 131 39.7
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 2.3e-14 82.8 85 48.2
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 3.9e-14 82.0 87 48.3
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 8.7e-14 80.9 70 52.9
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 2.5e-13 79.3 69 52.2
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 1.3e-12 77.0 115 40.0
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 3.8e-09 65.5 111 37.8
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 4.2e-08 62.0 84 42.9
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 1.2e-07 60.5 115 37.4
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 2.7e-07 59.3 108 39.8
Atru.chr1.3017 Acer truncatum HOM05D006427 ORTHO05D008147 2.3e-06 56.2 89 40.4


User provided reference genes

Program Settings