Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 2574.7 1346 100.0
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 2343.2 1333 92.1
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 2124.4 1325 84.9
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 2117.8 1331 85.4
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1806.2 1334 74.0
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 1707.6 1329 70.0
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 1681.4 1331 69.0
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 0.0e+00 1620.1 1328 68.7
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 0.0e+00 1563.5 1260 68.7
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1521.5 1346 64.3
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1510.4 1352 63.5
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1308.5 1363 56.8
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1251.9 1367 54.8
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1229.2 1364 54.8
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1162.5 1349 52.4
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1158.3 1272 54.2
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1144.4 1351 51.1
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1140.2 1352 51.0
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1129.8 1268 53.2
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 0.0e+00 1124.8 935 65.1
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1095.1 1347 49.5
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1082.0 1378 48.0
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.5e-307 1060.1 1359 48.4
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 1.9e-307 1059.7 1379 47.4
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 1.2e-304 1050.4 1371 48.6
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.9e-299 1033.1 1347 47.7
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 2.7e-298 1029.2 1379 47.4
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 5.2e-297 1025.0 1347 48.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.6e-296 1022.7 1326 48.4
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 4.8e-295 1018.5 1421 45.9
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 2.4e-286 989.6 1338 47.8
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.2e-282 977.2 1353 47.5
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 5.7e-280 968.4 1335 46.5
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 1.7e-279 966.8 1364 47.6
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.7e-276 956.8 1375 45.9
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.3e-276 956.4 1393 43.9
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.3e-275 952.6 1442 42.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 2.8e-274 949.5 1342 46.2
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 8.0e-274 948.0 1408 43.9
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 4.0e-273 945.7 1352 44.8
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 4.1e-270 935.6 1403 43.5
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 6.0e-269 931.8 1323 45.0
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.7e-260 903.7 1362 44.8
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.0e-260 902.9 1314 44.1
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.9e-259 900.2 1399 42.9
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 4.7e-258 895.6 1290 43.6
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.1e-257 892.9 1304 44.3
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 9.2e-254 881.3 1413 41.6
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 1.6e-253 880.6 1365 40.9
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.6e-251 872.1 671 70.5
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 9.0e-249 864.8 1216 44.6
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 7.6e-248 861.7 1293 43.3
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.8e-247 859.4 1297 44.3
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.7e-239 833.9 1250 43.2
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.5e-237 826.2 1300 43.5
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 6.7e-236 822.0 1372 41.2
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 2.9e-231 806.6 1262 42.4
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 9.6e-227 791.6 1277 42.4
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 2.8e-226 790.0 1285 41.8
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.2e-223 780.4 1303 39.8
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 2.2e-215 753.8 949 47.6
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 5.0e-215 752.7 1333 40.4
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 8.5e-215 751.9 1095 42.7
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 2.8e-210 736.9 1428 38.8
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 4.8e-210 736.1 1396 37.5
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 3.3e-195 686.8 1258 38.7
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.4e-193 681.4 811 49.2
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 2.4e-185 654.1 1348 37.1
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 1.2e-184 651.7 1249 38.8
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 3.5e-184 650.2 1307 35.3
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 4.5e-184 649.8 1337 35.5
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 3.7e-178 630.2 1348 35.2
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.4e-177 627.5 1342 34.9
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 5.5e-174 616.3 1338 35.5
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.5e-171 608.2 1303 35.8
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 1.7e-170 604.7 1335 35.2
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.1e-169 602.1 1333 34.0
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 1.6e-168 598.2 1351 35.5
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.5e-166 591.7 1304 36.7
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.9e-166 591.3 1329 34.5
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 3.6e-165 587.0 1235 33.8
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 6.1e-165 586.3 1333 33.4
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.2e-163 582.0 1333 34.1
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 6.4e-162 576.2 1336 34.3
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.1e-158 565.5 1200 33.5
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 2.8e-157 560.8 758 45.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 4.0e-140 503.8 1335 32.4
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 1.3e-138 498.8 1305 32.1
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.3e-126 457.2 707 43.4
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 2.2e-122 444.9 1448 30.5
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 2.9e-114 417.9 487 51.3
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 1.3e-109 402.5 985 32.9
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 4.5e-107 394.0 439 55.8
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.8e-101 374.0 594 40.4
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 5.3e-92 344.0 1201 27.8
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 2.3e-87 328.6 736 34.4
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.3e-84 317.4 438 46.8
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 9.7e-78 296.6 1521 26.1
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.2e-70 273.1 732 32.2
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.2e-70 273.1 298 50.7
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 7.0e-68 263.8 187 69.5
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.5e-67 261.5 203 64.5
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 3.8e-66 258.1 1661 24.3
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.2e-61 242.3 364 40.9
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 1.4e-60 239.6 169 68.6
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 4.5e-59 234.6 160 68.8
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-57 229.9 329 42.6
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.5e-57 229.6 221 56.1
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 3.3e-57 228.4 1025 25.7
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 1.4e-44 186.4 252 46.8
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 2.5e-41 175.6 105 78.1
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 2.3e-39 169.1 158 55.7
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 8.3e-37 160.6 1329 21.9
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 3.0e-34 152.1 110 66.4
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 8.9e-31 140.6 154 46.8
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 3.4e-30 138.7 109 64.2
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 2.1e-27 129.4 117 60.7
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 8.6e-26 124.0 131 57.3
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 4.4e-22 111.7 266 35.0
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.7e-18 99.8 254 39.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.0e-18 99.0 61 75.4
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 8.7e-18 97.4 89 46.1
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 2.5e-17 95.9 89 46.1
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 8.4e-13 80.9 89 47.2
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.1e-12 80.5 113 59.3
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 2.1e-11 76.3 117 40.2
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.3e-10 73.6 188 34.0
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 1.3e-10 73.6 148 34.5
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 6.6e-10 71.2 57 56.1
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 8.7e-10 70.9 129 28.7
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.1e-09 70.5 57 54.4
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 9.6e-09 67.4 52 59.6
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.1e-08 66.2 74 44.6
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 6.9e-07 61.2 51 49.0


User provided reference genes

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