Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00052g02012 Petunia axillaris HOM05D003840 ORTHO05D004565 5.7e-56 220.7 113 100.0
Nitab4.5_0010521g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 8.6e-28 127.1 104 66.3
Nitab4.5_0003769g0100 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.5e-27 126.3 98 69.4
Sc07g0002600 Simmondsia chinensis HOM05D003840 ORTHO05D004565 1.9e-27 125.9 97 68.0
Thecc.06G008900 Theobroma cacao HOM05D003840 ORTHO05D004565 9.5e-27 123.6 107 61.7
Actinidia35256 Actinidia chinensis HOM05D003840 ORTHO05D004565 3.6e-26 121.7 94 66.0
CSS0003611 Camellia sinensis var. sinensis HOM05D003840 ORTHO05D004565 3.6e-26 121.7 94 68.1
Hund22938 Selenicereus undatus HOM05D003840 ORTHO05D004565 3.6e-26 121.7 91 70.3
ATR0680G057 Amborella trichopoda HOM05D003840 ORTHO05D004565 4.7e-26 121.3 101 62.4
Dinv18297 Davidia involucrata HOM05D003840 ORTHO05D004565 4.7e-26 121.3 96 65.6
Duzib213G0026 Durio zibethinus HOM05D003840 ORTHO05D004565 6.1e-26 120.9 97 64.9
TAR626G1410 Trochodendron aralioides HOM05D003840 ORTHO05D004565 6.1e-26 120.9 94 67.0
Cc05_g12240 Coffea canephora HOM05D003840 ORTHO05D004565 1.0e-25 120.2 96 64.6
Gohir.D05G358600 Gossypium hirsutum HOM05D003840 ORTHO05D004565 1.0e-25 120.2 95 65.3
Gorai.009G434700 Gossypium raimondii HOM05D003840 ORTHO05D004565 1.0e-25 120.2 95 65.3
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla HOM05D003840 ORTHO05D004565 1.0e-25 120.2 94 67.0
Nn1g06588 Nelumbo nucifera HOM05D003840 ORTHO05D004565 1.0e-25 120.2 96 64.6
Oeu005421.1 Olea europaea HOM05D003840 ORTHO05D004565 1.0e-25 120.2 96 64.6
TAR624G1142 Trochodendron aralioides HOM05D003840 ORTHO05D004565 1.4e-25 119.8 94 67.0
Gohir.A04G028700 Gossypium hirsutum HOM05D003840 ORTHO05D004565 1.8e-25 119.4 95 65.3
Nitab4.5_0003769g0030 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.8e-25 119.4 94 67.0
Rhsim04G0019800 Rhododendron simsii HOM05D003840 ORTHO05D004565 1.8e-25 119.4 94 67.0
Solyc07g063270.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 1.8e-25 119.4 94 67.0
Sopen07g031450 Solanum pennellii HOM05D003840 ORTHO05D004565 1.8e-25 119.4 94 67.0
Eucgr.F03333 Eucalyptus grandis HOM05D003840 ORTHO05D004565 2.3e-25 119.0 105 60.0
Glyma.12G223000 Glycine max HOM05D003840 ORTHO05D004565 2.3e-25 119.0 105 60.0
Oeu060544.1 Olea europaea HOM05D003840 ORTHO05D004565 2.3e-25 119.0 96 63.5
Glyma.13G278500 Glycine max HOM05D003840 ORTHO05D004565 3.0e-25 118.6 105 60.0
PGSC0003DMG400012452 Solanum tuberosum HOM05D003840 ORTHO05D004565 4.0e-25 118.2 98 64.3
Manes.01G147800 Manihot esculenta HOM05D003840 ORTHO05D004565 5.2e-25 117.9 97 62.9
Manes.03G112600 Manihot esculenta HOM05D003840 ORTHO05D004565 8.9e-25 117.1 93 63.4
Haze_09463 Corylus avellana HOM05D003840 ORTHO05D004565 1.2e-24 116.7 96 62.5
Solyc07g063280.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 1.2e-24 116.7 102 61.8
Lsat_1_v5_gn_9_97121 Lactuca sativa HOM05D003840 ORTHO05D004565 1.5e-24 116.3 91 65.9
Nitab4.5_0011553g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.5e-24 116.3 102 61.8
RcHm_v2.0_Chr7g0222551 Rosa chinensis HOM05D003840 ORTHO05D004565 1.5e-24 116.3 107 57.9
SalBow7G0398 Salvia bowleyana HOM05D003840 ORTHO05D004565 1.5e-24 116.3 107 57.9
SalBow7G4534 Salvia bowleyana HOM05D003840 ORTHO05D004565 1.5e-24 116.3 107 57.9
MSTRG.15219 Avicennia marina HOM05D003840 ORTHO05D004565 2.0e-24 115.9 96 64.6
Cpa.g.sc80.41 Carica papaya HOM05D003840 ORTHO05D004565 2.0e-24 115.9 91 67.0
VMungo1080G0416 Vigna mungo HOM05D003840 ORTHO05D004565 2.6e-24 115.5 110 57.3
PGSC0003DMG400012453 Solanum tuberosum HOM05D003840 ORTHO05D004565 3.4e-24 115.2 110 57.3
Peaxi162Scf00069g01212 Petunia axillaris HOM05D003840 ORTHO05D004565 4.4e-24 114.8 94 64.9
Potri.001G402500 Populus trichocarpa HOM05D003840 ORTHO05D004565 4.4e-24 114.8 106 57.5
Phvul.007G273700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 7.5e-24 114.0 105 59.0
Phvul.011G177700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 7.5e-24 114.0 105 59.0
SGA_v2.0_scaffold73G24291 Striga asiatica HOM05D003840 ORTHO05D004565 7.5e-24 114.0 99 62.6
unitig_46.g18324 Utricularia gibba HOM05D003840 ORTHO05D004565 7.5e-24 114.0 97 60.8
Aqoxy4G01004 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 1.3e-23 113.2 101 60.4
HanXRQChr13g0407421 Helianthus annuus HOM05D003840 ORTHO05D004565 1.3e-23 113.2 103 58.3
RcHm_v2.0_Chr4g0433481 Rosa chinensis HOM05D003840 ORTHO05D004565 1.3e-23 113.2 97 61.9
Dinv08310 Davidia involucrata HOM05D003840 ORTHO05D004565 1.7e-23 112.8 94 62.8
Lalb_Chr01g0016961 Lupinus albus HOM05D003840 ORTHO05D004565 1.7e-23 112.8 105 56.2
Lalb_Chr25g0286531 Lupinus albus HOM05D003840 ORTHO05D004565 1.7e-23 112.8 105 56.2
THA.LOC104818066 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 1.7e-23 112.8 99 63.6
THA.LOC104810482 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 2.2e-23 112.5 99 62.6
TWI53G0481 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 2.2e-23 112.5 107 54.2
Atru.chr2.2716 Acer truncatum HOM05D003840 ORTHO05D004565 2.9e-23 112.1 105 57.1
Aa31LG10G2130 Aethionema arabicum HOM05D003840 ORTHO05D004565 2.9e-23 112.1 99 60.6
arahy.Tifrunner.gnm1.ann1.7MJ4MY Arachis hypogaea HOM05D003840 ORTHO05D004565 2.9e-23 112.1 105 56.2
arahy.Tifrunner.gnm1.ann1.D4F45X Arachis hypogaea HOM05D003840 ORTHO05D004565 2.9e-23 112.1 105 56.2
Thhalv10011345m.g Eutrema salsugineum HOM05D003840 ORTHO05D004565 2.9e-23 112.1 99 61.6
Lj5g0011990 Lotus japonicus HOM05D003840 ORTHO05D004565 2.9e-23 112.1 105 59.0
Sabra16G0264000 Salix brachista HOM05D003840 ORTHO05D004565 2.9e-23 112.1 106 56.6
SEGI_28100 Sequoiadendron giganteum HOM05D003840 ORTHO05D004565 2.9e-23 112.1 91 63.7
SGA_v2.0_scaffold34G13732 Striga asiatica HOM05D003840 ORTHO05D004565 2.9e-23 112.1 101 61.4
HPP92_027892 Vanilla planifolia HOM05D003840 ORTHO05D004565 2.9e-23 112.1 94 61.7
CANSAT56G3533 Cannabis sativa HOM05D003840 ORTHO05D004565 3.7e-23 111.7 106 54.7
Lj8A157T55 Lonicera japonica HOM05D003840 ORTHO05D004565 6.4e-23 110.9 95 61.1
EL10Ac4g08140 Beta vulgaris HOM05D003840 ORTHO05D004565 8.3e-23 110.5 93 62.4
PSO210G5630 Papaver somniferum HOM05D003840 ORTHO05D004565 1.1e-22 110.2 95 60.0
CsaV3_5G037440 Cucumis sativus L. HOM05D003840 ORTHO05D004565 1.4e-22 109.8 96 58.3
Sed0025069 Sechium edule HOM05D003840 ORTHO05D004565 1.4e-22 109.8 95 61.1
Ciclev10007878m.g Citrus clementina HOM05D003840 ORTHO05D004565 1.8e-22 109.4 95 58.9
MD00G1089700 Malus domestica HOM05D003840 ORTHO05D004565 1.8e-22 109.4 106 54.7
SMO367G1211 Selaginella moellendorffii HOM05D003840 ORTHO05D004565 1.8e-22 109.4 91 60.4
Migut.M00853 Erythranthe guttata HOM05D003840 ORTHO05D004565 2.4e-22 109.0 100 60.0
QL08p020021 Quercus lobata HOM05D003840 ORTHO05D004565 3.2e-22 108.6 107 56.1
CiPaw.08G146100 Carya illinoinensis HOM05D003840 ORTHO05D004565 4.1e-22 108.2 81 66.7
CiPaw.12G120400 Carya illinoinensis HOM05D003840 ORTHO05D004565 4.1e-22 108.2 81 66.7
PGR031G3608 Punica granatum HOM05D003840 ORTHO05D004565 5.4e-22 107.8 105 54.3
Carub.0001s4212 Capsella rubella HOM05D003840 ORTHO05D004565 7.0e-22 107.5 99 59.6
ECA240G0083 Erigeron canadensis HOM05D003840 ORTHO05D004565 7.0e-22 107.5 87 62.1
PSO832G0205 Papaver somniferum HOM05D003840 ORTHO05D004565 7.0e-22 107.5 95 58.9
DCAR_013090 Daucus carota HOM05D003840 ORTHO05D004565 9.2e-22 107.1 97 59.8
Ca_01831_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 1.2e-21 106.7 105 56.2
TWI73G0301 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 1.6e-21 106.3 107 52.3
GSVIVG01014369001 Vitis vinifera HOM05D003840 ORTHO05D004565 2.7e-21 105.5 81 66.7
PSO832G2656 Papaver somniferum HOM05D003840 ORTHO05D004565 3.5e-21 105.1 94 59.6
BcaB02g10967 Brassica carinata HOM05D003840 ORTHO05D004565 7.8e-21 104.0 99 57.6
BcaB07g33370 Brassica carinata HOM05D003840 ORTHO05D004565 7.8e-21 104.0 99 57.6
A06p01380 Brassica napus HOM05D003840 ORTHO05D004565 1.0e-20 103.6 99 57.6
C06p14330 Brassica napus HOM05D003840 ORTHO05D004565 1.0e-20 103.6 99 57.6
BraA06t23360Z Brassica rapa HOM05D003840 ORTHO05D004565 1.0e-20 103.6 99 57.6
Cfa020553 Carpinus fangiana HOM05D003840 ORTHO05D004565 1.0e-20 103.6 81 63.0
FvH4_5g29580 Fragaria vesca HOM05D003840 ORTHO05D004565 1.0e-20 103.6 107 53.3
FAN13G0946 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.0e-20 103.6 107 53.3
FAN18G3753 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.0e-20 103.6 107 53.3
Prupe.4G184700 Prunus persica HOM05D003840 ORTHO05D004565 1.0e-20 103.6 111 50.5
Sp1g39540 Schrenkiella parvula HOM05D003840 ORTHO05D004565 1.0e-20 103.6 99 57.6
ClCG09G018660 Citrullus lanatus HOM05D003840 ORTHO05D004565 1.3e-20 103.2 126 46.0
Pp3c1_3230 Physcomitrium patens HOM05D003840 ORTHO05D004565 1.3e-20 103.2 121 47.9
Os03g0352400 Oryza sativa ssp. japonica HOM05D003840 ORTHO05D004565 1.7e-20 102.8 90 58.9
vmacro09541 Vaccinium macrocarpon HOM05D003840 ORTHO05D004565 1.7e-20 102.8 138 46.4
AT1G52980 Arabidopsis thaliana HOM05D003840 ORTHO05D004565 2.3e-20 102.4 99 56.6
BcaC08g44019 Brassica carinata HOM05D003840 ORTHO05D004565 2.3e-20 102.4 99 56.6
BolC6t36608H Brassica oleracea HOM05D003840 ORTHO05D004565 2.3e-20 102.4 99 56.6
FAN04G1578 Fragaria x ananassa HOM05D003840 ORTHO05D004565 3.0e-20 102.1 107 52.3
SHI05032 Sapria himalayana HOM05D003840 ORTHO05D004565 5.0e-20 101.3 91 58.2
Zm00001eb016990 Zea mays HOM05D003840 ORTHO05D004565 5.0e-20 101.3 91 54.9
Ah.03g144680 Amaranthus hybridus HOM05D003840 ORTHO05D004565 6.6e-20 100.9 93 54.8
FAN08G1280 Fragaria x ananassa HOM05D003840 ORTHO05D004565 6.6e-20 100.9 97 56.7
Manes.03G112800 Manihot esculenta HOM05D003840 ORTHO05D004565 6.6e-20 100.9 87 59.8
BcaC08g43481 Brassica carinata HOM05D003840 ORTHO05D004565 8.6e-20 100.5 99 56.6
C06p08670 Brassica napus HOM05D003840 ORTHO05D004565 8.6e-20 100.5 99 56.6
AL1G61320 Arabidopsis lyrata HOM05D003840 ORTHO05D004565 1.1e-19 100.1 93 57.0
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 2.5e-19 99.0 105 53.3
AUR62034278 Chenopodium quinoa HOM05D003840 ORTHO05D004565 3.3e-19 98.6 91 57.1
FvH4_6g33850 Fragaria vesca HOM05D003840 ORTHO05D004565 5.6e-19 97.8 90 58.9
Medtr4g081850 Medicago truncatula HOM05D003840 ORTHO05D004565 7.3e-19 97.4 105 51.4
PSO782G4342 Papaver somniferum HOM05D003840 ORTHO05D004565 7.3e-19 97.4 95 54.7
PGSC0003DMG400015436 Solanum tuberosum HOM05D003840 ORTHO05D004565 7.3e-19 97.4 77 62.3
Medtr2g079510 Medicago truncatula HOM05D003840 ORTHO05D004565 1.2e-18 96.7 105 51.4
PSO210G3517 Papaver somniferum HOM05D003840 ORTHO05D004565 1.6e-18 96.3 88 55.7
AagrBONN_evm.TU.Sc2ySwM_117.381 Anthoceros agrestis HOM05D003840 ORTHO05D004565 2.1e-18 95.9 97 54.6
AagrBONN_evm.TU.Sc2ySwM_344.5148 Anthoceros agrestis HOM05D003840 ORTHO05D004565 2.1e-18 95.9 97 54.6
PGSC0003DMG400016932 Solanum tuberosum HOM05D003840 ORTHO05D004565 2.1e-18 95.9 81 59.3
MELO3C033647.2 Cucumis melo HOM05D003840 ORTHO05D004565 3.6e-18 95.1 131 42.7
Mapoly0122s0018 Marchantia polymorpha HOM05D003840 ORTHO05D004565 3.6e-18 95.1 95 54.7
COL.COLO4_09425 Corchorus olitorius HOM05D003840 ORTHO05D004565 4.7e-18 94.7 81 60.5
FAN14G4652 Fragaria x ananassa HOM05D003840 ORTHO05D004565 4.7e-18 94.7 118 50.0
MD10G1052400 Malus domestica HOM05D003840 ORTHO05D004565 4.7e-18 94.7 106 50.0
Sed0017316 Sechium edule HOM05D003840 ORTHO05D004565 6.2e-18 94.4 94 54.3
CARHR043180 Cardamine hirsuta HOM05D003840 ORTHO05D004565 1.1e-17 93.6 93 54.8
PRCOL_00004437 Prasinoderma coloniale HOM05D003840 ORTHO05D004565 2.3e-17 92.4 91 52.7
PGSC0003DMG400028011 Solanum tuberosum HOM05D003840 ORTHO05D004565 4.0e-17 91.7 77 59.7
TPR.G28203 Trifolium pratense HOM05D003840 ORTHO05D004565 6.8e-17 90.9 105 49.5
TPR.G39016 Trifolium pratense HOM05D003840 ORTHO05D004565 6.8e-17 90.9 105 49.5
TPR.G38959 Trifolium pratense HOM05D003840 ORTHO05D004565 1.2e-16 90.1 86 55.8
Cre07.g340050 Chlamydomonas reinhardtii HOM05D003840 ORTHO05D004565 1.5e-16 89.7 85 52.9
MCO07G526 Micromonas commoda HOM05D003840 ORTHO05D004565 3.4e-16 88.6 88 52.3
MD03G1224500 Malus domestica HOM05D003840 ORTHO05D004565 1.7e-15 86.3 86 52.3
Lj3g0017419 Lotus japonicus HOM05D003840 ORTHO05D004565 1.9e-14 82.8 91 49.5
CARHR224670 Cardamine hirsuta HOM05D003840 ORTHO05D004565 3.5e-13 78.6 81 50.6
Ca_01830_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 1.3e-12 76.6 101 45.5
Medtr5g010400 Medicago truncatula HOM05D003840 ORTHO05D004565 5.6e-11 71.2 51 70.6
CBR_g28541 Chara braunii HOM05D003840 ORTHO05D004565 1.1e-09 67.0 51 62.7
VMungo0540G2174 Vigna mungo HOM05D003840 ORTHO05D004565 5.2e-09 64.7 49 65.3
Phvul.005G082701 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 1.2e-08 63.5 71 49.3
CAN.G162.71 Capsicum annuum HOM05D003840 ORTHO05D004565 9.9e-08 60.5 36 75.0
FAN05G0276 Fragaria x ananassa HOM05D003840 ORTHO05D004565 6.4e-07 57.8 87 46.0


User provided reference genes

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