Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.2e-154 549.7 263 100.0
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 6.9e-129 464.2 269 83.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 3.4e-128 461.8 263 83.3
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.7e-127 459.5 263 83.3
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.0e-124 450.3 265 81.9
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 4.2e-110 401.7 264 70.1
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 7.9e-109 397.5 264 70.5
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.0e-108 397.1 263 71.9
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.5e-107 393.3 262 71.0
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 2.2e-106 389.4 262 70.2
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 2.8e-106 389.0 263 70.0
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 4.8e-106 388.3 272 71.7
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 8.2e-106 387.5 265 72.1
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.4e-105 386.7 262 69.1
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.8e-105 386.3 262 68.7
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 4.1e-105 385.2 262 69.5
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.6e-104 382.5 276 68.1
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.6e-104 382.5 259 71.0
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.6e-104 382.5 261 69.3
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 7.7e-104 380.9 266 66.9
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.0e-103 380.6 266 66.9
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 2.9e-103 379.0 264 68.9
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 3.8e-103 378.6 262 68.3
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.8e-103 378.6 261 68.6
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-103 378.3 262 68.3
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 5.0e-103 378.3 261 70.1
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.0e-103 378.3 264 68.6
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 6.5e-103 377.9 264 68.9
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.5e-103 377.9 262 68.3
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.1e-102 377.1 263 69.6
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.4e-102 376.7 261 69.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.9e-102 376.3 261 66.3
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.9e-102 376.3 262 68.3
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 4.2e-102 375.2 262 68.7
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.7e-101 372.5 264 70.5
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 3.6e-101 372.1 262 67.6
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.6e-101 372.1 262 67.2
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 6.1e-101 371.3 262 67.2
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 6.1e-101 371.3 262 69.5
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 7.9e-101 370.9 267 66.7
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 7.9e-101 370.9 265 67.2
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 7.9e-101 370.9 263 66.2
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-100 370.5 263 67.3
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.4e-100 370.2 281 65.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.3e-100 369.4 271 67.5
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 3.0e-100 369.0 263 66.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 3.9e-100 368.6 238 74.4
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 6.7e-100 367.9 262 66.4
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.8e-100 367.5 262 66.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.1e-99 367.1 263 66.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 2.0e-99 366.3 279 66.7
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 2.6e-99 365.9 268 66.8
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 5.7e-99 364.8 264 65.9
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 7.4e-99 364.4 262 66.4
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 7.4e-99 364.4 262 67.2
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.3e-98 363.6 258 67.1
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.7e-98 363.2 264 69.3
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.8e-98 362.5 261 67.0
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.7e-98 362.1 262 67.2
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.7e-98 362.1 262 66.4
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.7e-98 362.1 262 64.1
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 4.8e-98 361.7 263 68.4
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 4.8e-98 361.7 258 67.1
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 8.2e-98 360.9 263 63.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.1e-97 360.5 262 65.3
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.1e-97 360.5 272 66.5
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.4e-97 360.1 262 65.3
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.8e-97 359.8 263 68.1
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.4e-97 359.4 261 64.8
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-97 359.4 258 66.3
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.4e-97 359.4 258 66.3
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 4.1e-97 358.6 262 65.6
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 4.1e-97 358.6 261 63.6
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 5.3e-97 358.2 243 72.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 6.9e-97 357.8 262 65.6
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.2e-96 357.1 263 64.6
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.5e-96 356.7 256 67.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-96 356.3 263 65.4
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 4.5e-96 355.1 261 65.5
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 5.9e-96 354.8 267 64.4
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 7.7e-96 354.4 261 65.9
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 7.7e-96 354.4 261 65.9
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.0e-95 354.0 272 65.8
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 1.7e-95 353.2 264 64.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-95 352.8 263 65.0
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-95 352.8 263 65.0
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.2e-95 352.8 317 56.8
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 8.5e-95 350.9 263 64.6
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 8.5e-95 350.9 265 65.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.1e-94 350.5 262 63.4
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.1e-94 350.5 262 64.9
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 3.2e-94 349.0 263 65.0
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 5.5e-94 348.2 264 63.3
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 5.5e-94 348.2 260 65.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.6e-93 346.7 262 62.6
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.6e-93 346.7 269 63.6
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.6e-93 346.7 262 63.0
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.6e-93 346.7 263 62.0
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.7e-93 345.9 264 62.9
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.6e-93 345.5 266 63.9
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.8e-92 343.2 275 61.8
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.1e-91 340.5 366 53.3
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.3e-91 339.0 264 62.1
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 4.4e-91 338.6 262 63.7
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 2.2e-90 336.3 297 57.6
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 4.8e-90 335.1 262 62.2
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.4e-89 333.6 262 63.0
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 5.3e-89 331.6 261 60.9
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 3.8e-87 325.5 242 65.3
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 7.2e-86 321.2 221 68.8
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 4.0e-84 315.5 222 66.2
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 8.8e-84 314.3 217 67.3
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 8.8e-84 314.3 267 59.9
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 8.8e-84 314.3 219 66.2
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.4e-83 312.0 273 62.6
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 8.2e-82 307.8 262 57.3
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.1e-81 307.4 219 66.7
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.2e-80 303.9 219 64.8
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.2e-79 299.7 244 59.0
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.1e-78 297.4 271 53.5
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 4.7e-77 292.0 203 70.4
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 6.8e-76 288.1 201 69.2
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 3.4e-75 285.8 186 76.3
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.8e-74 282.7 201 67.7
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 3.7e-74 282.3 197 69.0
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.1e-73 280.8 196 68.4
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 4.1e-73 278.9 207 66.2
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.0e-71 274.2 238 55.5
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.7e-71 273.5 238 55.0
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.2e-69 267.3 262 53.8
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 5.7e-67 258.5 316 47.8
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.3e-66 257.3 140 85.0
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 2.8e-66 256.1 237 56.1
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.2e-64 250.8 263 49.0
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.7e-64 249.6 176 70.5
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.5e-64 249.2 140 82.1
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 3.8e-63 245.7 187 62.0
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 6.6e-63 245.0 266 45.9
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.5e-54 214.5 238 47.1
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.2e-48 197.6 157 59.9
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 4.6e-48 195.7 214 50.9
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.9e-47 192.6 140 67.1
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.5e-46 189.9 104 86.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.3e-46 189.1 185 53.0
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 2.6e-43 179.9 183 51.9
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 8.3e-42 174.9 132 62.9
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.4e-41 173.3 108 73.1
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.5e-38 164.1 261 36.0
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 7.1e-33 145.2 313 32.9
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 6.0e-32 142.1 96 66.7
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 5.6e-30 135.6 277 31.8
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.6e-30 134.8 179 44.1
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 4.9e-26 122.5 98 55.1
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.4e-25 120.9 171 45.0
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.2e-25 119.4 153 41.8
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 4.8e-21 105.9 78 60.3
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.3e-15 87.0 80 48.8
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.1e-15 85.9 58 69.0
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.7e-15 85.5 125 41.6
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 2.8e-13 80.1 53 66.0
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-12 77.4 51 72.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-12 77.4 51 72.5
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.2e-11 74.7 57 59.6
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.1e-07 59.3 37 73.0
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 1.9e-06 57.4 53 50.9
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.5e-06 57.0 40 57.5


User provided reference genes

Program Settings