Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 5.0e-81 304.3 144 100.0
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 5.5e-80 300.8 144 97.9
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.6e-66 256.1 144 83.3
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.7e-66 253.8 144 82.6
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.7e-66 253.8 144 82.6
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.3e-65 253.1 147 83.7
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 6.5e-65 250.8 144 82.6
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.5e-65 250.8 146 80.1
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 3.3e-64 248.4 145 80.7
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 5.5e-64 247.7 145 80.7
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.6e-63 246.1 146 78.8
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 4.7e-63 244.6 144 81.2
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 6.1e-63 244.2 145 82.1
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 6.1e-63 244.2 147 80.3
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 6.1e-63 244.2 147 80.3
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 8.0e-63 243.8 147 79.6
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 8.0e-63 243.8 146 79.5
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.0e-62 243.4 146 78.8
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 1.4e-62 243.0 147 81.0
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.4e-62 243.0 146 77.4
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.4e-62 243.0 145 79.3
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.8e-62 242.7 146 79.5
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 2.3e-62 242.3 149 79.2
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 3.0e-62 241.9 144 77.1
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 3.0e-62 241.9 147 80.3
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 3.0e-62 241.9 146 78.8
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.0e-62 241.5 139 82.0
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 5.2e-62 241.1 148 78.4
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.2e-62 241.1 146 78.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 6.8e-62 240.7 134 82.8
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 6.8e-62 240.7 145 77.9
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 6.8e-62 240.7 133 84.2
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 6.8e-62 240.7 147 79.6
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 8.9e-62 240.4 146 78.8
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.2e-61 240.0 145 77.9
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.0e-61 239.2 141 78.0
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 3.4e-61 238.4 146 76.7
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 4.4e-61 238.0 149 76.5
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 4.4e-61 238.0 146 78.1
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 4.4e-61 238.0 132 85.6
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 5.7e-61 237.7 146 77.4
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 7.5e-61 237.3 144 77.8
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 7.5e-61 237.3 144 77.8
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 7.5e-61 237.3 146 76.0
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 9.8e-61 236.9 144 77.1
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.7e-60 236.1 147 76.9
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.7e-60 236.1 146 78.8
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.7e-60 236.1 150 74.7
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.7e-60 236.1 147 77.6
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.2e-60 235.7 145 76.6
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 2.2e-60 235.7 150 76.7
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 3.7e-60 235.0 132 81.1
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 3.7e-60 235.0 119 87.4
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 6.3e-60 234.2 148 77.0
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 6.3e-60 234.2 142 78.9
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.3e-60 234.2 119 87.4
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 8.3e-60 233.8 146 76.7
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 1.1e-59 233.4 148 75.0
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 1.1e-59 233.4 120 90.0
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.1e-59 233.4 146 75.3
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 1.4e-59 233.0 145 73.1
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.4e-59 233.0 120 89.2
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 3.1e-59 231.9 145 73.1
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 3.1e-59 231.9 150 73.3
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 4.1e-59 231.5 124 84.7
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 4.1e-59 231.5 146 73.3
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 5.4e-59 231.1 148 74.3
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 7.0e-59 230.7 140 78.6
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 9.2e-59 230.3 126 81.7
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 9.2e-59 230.3 116 90.5
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.2e-58 229.9 120 86.7
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 3.5e-58 228.4 140 75.7
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 3.5e-58 228.4 140 76.4
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.5e-58 228.0 112 89.3
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 4.5e-58 228.0 141 76.6
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 4.5e-58 228.0 141 76.6
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 5.9e-58 227.6 118 87.3
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 7.8e-58 227.3 140 76.4
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.0e-57 226.9 145 73.1
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 2.9e-57 225.3 140 75.7
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 8.6e-57 223.8 140 75.7
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 1.5e-56 223.0 140 73.6
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 1.5e-56 223.0 140 77.1
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 2.5e-56 222.2 147 67.3
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 3.3e-56 221.9 121 81.8
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 7.3e-56 220.7 135 76.3
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 7.3e-56 220.7 131 79.4
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 9.5e-56 220.3 150 71.3
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.2e-55 219.9 137 75.9
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.2e-55 219.9 137 75.9
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 1.2e-55 219.9 139 74.8
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.6e-55 219.5 137 75.9
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 4.7e-55 218.0 131 79.4
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 4.7e-55 218.0 153 66.7
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 1.0e-54 216.9 116 83.6
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.4e-54 216.5 131 76.3
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 1.8e-54 216.1 133 75.2
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 1.8e-54 216.1 126 78.6
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 8.9e-54 213.8 171 60.2
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 8.9e-54 213.8 171 60.2
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 8.9e-54 213.8 137 71.5
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 2.0e-53 212.6 110 85.5
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 2.6e-53 212.2 149 69.8
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 5.8e-53 211.1 112 82.1
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 7.5e-53 210.7 101 92.1
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.9e-52 208.8 124 75.8
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 6.4e-52 207.6 125 76.0
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 8.3e-52 207.2 115 82.6
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 4.1e-51 204.9 126 73.0
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 7.0e-51 204.1 114 78.9
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 2.3e-49 199.1 127 68.5
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.0e-49 198.7 105 83.8
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.6e-47 193.0 104 79.8
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.6e-47 191.8 160 61.9
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.7e-47 191.4 144 67.4
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.7e-47 191.4 104 78.8
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 1.8e-46 189.5 126 69.0
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 8.9e-46 187.2 157 63.7
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.2e-45 186.8 148 65.5
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 3.7e-44 181.8 124 71.0
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 3.7e-44 181.8 112 78.6
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 4.9e-44 181.4 111 78.4
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 2.4e-43 179.1 91 83.5
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.7e-41 172.9 88 88.6
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 9.5e-40 167.2 91 84.6
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 4.7e-39 164.9 98 81.6
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 8.1e-39 164.1 152 59.2
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.9e-36 154.8 90 80.0
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 2.4e-35 152.5 78 79.5
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.9e-27 126.3 104 57.7
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 2.4e-27 125.9 61 86.9
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.5e-26 122.1 86 72.1
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.7e-25 119.8 64 78.1
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 2.2e-20 102.8 62 69.4
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 9.3e-19 97.4 52 82.7
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 4.6e-18 95.1 302 27.5
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 2.8e-15 85.9 74 64.9
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.6e-15 85.5 52 71.2
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 4.8e-15 85.1 58 70.7
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.4e-11 71.6 49 69.4
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.1e-10 69.7 40 72.5
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.1e-10 69.7 42 73.8
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.1e-10 69.7 37 86.5
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 1.6e-07 60.1 46 65.2
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.1e-07 59.7 30 76.7


User provided reference genes

Program Settings