Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 0.0e+00 2046.6 1090 100.0
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 0.0e+00 1887.1 1090 93.6
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.6e-296 1023.1 1100 57.1
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.7e-290 1003.0 1095 56.2
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.2e-275 953.7 1057 55.7
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.6e-256 890.2 1082 52.5
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 9.6e-209 731.5 902 51.1
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.1e-208 730.3 795 56.7
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 8.1e-208 728.4 954 49.5
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.9e-205 719.9 953 49.0
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 4.9e-205 719.2 956 49.7
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 9.3e-204 714.9 982 48.7
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.7e-203 713.4 974 49.5
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.0e-202 711.4 1028 47.0
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.3e-202 711.1 971 49.0
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.7e-202 710.7 981 49.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.0e-202 709.9 974 49.7
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 5.6e-201 705.7 965 49.0
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.2e-198 698.0 980 48.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 9.9e-198 694.9 964 48.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 3.8e-197 693.0 1054 46.4
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.1e-196 688.7 1008 46.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 7.1e-196 688.7 993 47.4
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.6e-195 687.6 956 47.8
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.9e-195 685.3 956 47.6
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 8.7e-194 681.8 980 46.6
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-193 681.0 1009 46.1
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.0e-191 672.9 974 47.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 9.0e-191 671.8 982 46.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 7.6e-190 668.7 981 46.4
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.5e-187 659.8 896 48.8
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 6.0e-187 659.1 982 46.9
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 8.7e-186 655.2 999 46.0
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.1e-184 650.6 987 46.5
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.7e-184 649.8 974 44.8
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 4.8e-184 649.4 951 46.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-183 647.9 982 45.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.4e-183 647.1 980 45.2
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.3e-183 646.0 982 45.3
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 2.9e-181 640.2 914 47.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-181 639.8 982 45.0
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.4e-180 637.9 914 46.8
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.5e-180 637.1 961 46.0
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.1e-179 634.0 914 46.6
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.5e-177 627.9 981 45.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.3e-176 624.8 898 47.2
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.1e-175 620.2 988 45.3
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.2e-173 614.0 924 45.7
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.1e-172 611.7 898 45.7
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.6e-171 607.8 980 45.3
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 6.1e-171 605.9 701 55.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.7e-170 602.4 918 45.5
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 6.7e-170 602.4 945 44.9
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.0e-169 600.9 901 46.2
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-169 600.5 994 42.9
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.7e-169 598.6 977 42.4
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.7e-168 597.8 915 45.7
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.1e-167 595.1 974 42.6
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.8e-167 594.3 952 46.1
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-167 594.3 977 42.7
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.8e-167 594.3 954 44.5
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 4.1e-167 593.2 981 43.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 5.3e-167 592.8 977 42.9
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.5e-166 591.3 956 44.5
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.5e-166 589.7 919 44.9
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.2e-165 587.4 955 43.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.5e-165 585.5 917 43.2
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 3.2e-164 583.6 975 44.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.2e-163 581.6 893 43.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-163 580.9 893 43.6
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.7e-163 580.5 950 43.5
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.0e-162 578.6 961 43.1
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.4e-162 578.2 958 44.1
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.0e-161 574.3 929 44.3
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 9.7e-161 572.0 998 42.8
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-159 568.5 878 44.1
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 3.1e-159 567.0 926 43.0
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 7.0e-159 565.8 972 41.7
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.6e-158 563.9 951 44.0
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.6e-158 563.9 878 44.0
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.5e-158 563.5 964 43.5
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.7e-158 562.4 816 47.3
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.5e-156 558.1 920 44.0
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.9e-156 557.8 934 43.5
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.9e-156 557.8 970 43.6
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 4.2e-156 556.6 908 43.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.2e-155 555.1 914 43.4
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.6e-155 554.7 909 43.2
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.8e-154 551.2 950 42.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.3e-152 545.0 969 43.0
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 2.4e-151 540.8 1038 39.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.1e-151 540.0 997 41.3
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.1e-148 531.9 919 42.9
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.0e-146 525.4 897 43.3
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 3.0e-146 523.9 948 41.9
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.8e-146 522.3 951 41.7
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.4e-145 520.0 905 41.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.4e-143 515.0 872 41.1
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.4e-143 513.1 1052 39.4
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.6e-142 511.5 931 42.0
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.3e-141 508.4 864 42.0
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.8e-141 506.9 980 40.0
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 5.0e-141 506.5 904 41.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 8.5e-141 505.8 896 42.1
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 2.5e-140 504.2 941 42.1
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 7.2e-140 502.7 958 40.7
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 9.5e-140 502.3 738 45.8
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.8e-139 500.7 966 39.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 8.0e-139 499.2 698 49.0
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 8.8e-138 495.7 898 41.5
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.1e-135 488.8 624 52.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.1e-135 487.3 996 38.3
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.7e-134 484.2 908 41.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.5e-134 483.8 966 38.1
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.3e-133 481.1 967 39.7
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.0e-131 472.6 929 40.0
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.0e-130 472.2 898 39.4
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.0e-130 470.7 939 38.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 3.4e-129 467.2 925 41.3
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 5.7e-129 466.5 918 39.9
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.7e-128 464.9 889 42.2
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.2e-128 464.5 950 38.1
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.2e-128 464.5 950 38.1
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 4.9e-128 463.4 937 38.0
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.1e-127 462.2 920 38.3
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.3e-125 455.3 861 39.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.3e-125 455.3 1039 35.4
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-123 448.7 714 44.0
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.2e-121 442.2 873 38.1
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.5e-121 441.8 928 40.1
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.0e-121 441.4 874 38.2
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.2e-120 438.0 986 38.1
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.2e-120 438.0 885 38.8
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 3.7e-120 437.2 944 37.1
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 3.7e-120 437.2 944 37.2
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.4e-119 434.5 936 37.4
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.5e-116 425.2 589 46.0
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 4.0e-114 417.2 819 38.9
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.9e-112 411.0 1091 33.6
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-109 401.0 728 42.2
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.0e-109 401.0 630 43.5
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.9e-106 389.4 1019 35.8
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 2.0e-105 388.3 1039 36.8
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.4e-105 387.1 528 49.2
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 3.2e-103 380.9 474 50.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 4.9e-96 357.1 911 35.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 4.6e-94 350.5 848 36.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.8e-91 340.5 1052 33.6
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 4.6e-86 323.9 542 42.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.2e-80 305.1 927 31.6
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.6e-78 297.4 947 33.6
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.4e-76 290.0 418 47.6
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 6.2e-75 287.0 1035 31.7
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 5.5e-71 273.9 277 57.4
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-69 269.2 335 50.1
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 5.7e-60 237.3 389 42.2
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 7.9e-54 216.9 347 45.0
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 3.4e-49 201.4 223 54.7
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.3e-48 199.5 566 32.9
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.8e-48 198.0 687 28.2
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 3.3e-44 184.9 424 36.3
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.3e-40 172.9 299 40.1
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 3.2e-39 168.3 356 39.3
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.0e-32 146.7 290 42.1
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 5.2e-29 134.4 109 59.6
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.4e-28 131.7 171 49.7
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.7e-27 128.3 287 34.5
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.4e-21 109.8 149 46.3
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-21 107.8 265 32.5
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 8.3e-19 100.5 118 49.2
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 3.5e-17 95.1 123 45.5
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.1e-14 85.9 120 44.2
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.4e-12 78.6 88 51.1
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.9e-11 75.5 461 25.4
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.9e-10 72.8 42 73.8
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.4e-10 72.4 156 37.2
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.7e-09 68.9 169 34.3
TAR371G1136 Trochodendron aralioides HOM05D030477 ORTHO05D004065 7.8e-09 67.4 39 79.5
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.9e-07 62.8 118 33.9
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.5e-07 62.4 121 34.7
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 2.5e-07 62.4 121 34.7
MCO04G343 Micromonas commoda HOM05D003655 ORTHO05D004065 1.2e-06 60.1 118 33.9
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.8e-06 58.9 90 41.1
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 3.6e-06 58.5 138 34.1
HPP92_000305 Vanilla planifolia HOM05D000527 ORTHO05D000559 3.6e-06 58.5 146 39.7
FAN27G2349 Fragaria x ananassa HOM05D000561 ORTHO05D000514 8.0e-06 57.4 80 37.5


User provided reference genes

Program Settings