Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 3580.8 1822 100.0
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 3521.9 1822 98.5
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2648.2 1839 74.4
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2634.8 1843 74.8
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2578.1 1845 73.9
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2529.6 1837 72.5
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2503.8 1841 71.2
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2503.4 1880 70.2
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2484.5 1838 70.8
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2481.8 1856 69.9
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2470.3 1836 70.8
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2469.5 1819 71.4
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2455.6 1845 70.1
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2449.1 1826 70.5
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2445.6 1838 70.5
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2443.3 1834 70.8
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2440.2 1838 70.7
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2436.4 1841 70.1
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2434.8 1827 70.3
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2434.4 1853 69.5
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2433.3 1832 69.9
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2422.1 1840 69.8
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2403.2 1872 68.5
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2401.7 1836 69.3
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2395.2 1836 68.5
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2384.8 1813 69.8
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2381.7 1840 68.5
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2376.3 1824 68.6
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2375.1 1840 69.1
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2371.3 1822 69.0
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2367.8 1843 68.1
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2365.1 1822 68.8
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2359.7 1837 68.8
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2346.6 1833 67.5
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2344.3 1834 67.3
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2334.3 1838 67.1
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2330.4 1835 67.4
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2326.2 1844 67.8
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2325.1 1852 67.6
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2322.7 1834 66.6
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2322.7 1834 66.6
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2320.4 1907 65.4
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2317.0 1838 66.1
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2313.1 1848 67.4
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2312.0 1834 66.4
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2305.8 1861 67.3
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2303.5 1848 67.2
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2302.7 1834 66.7
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2300.8 1804 67.7
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2299.2 1909 64.9
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2292.7 1848 67.5
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2290.4 1847 67.0
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2290.0 1798 68.0
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2281.5 1836 66.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2281.5 1830 65.6
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2280.0 1838 66.3
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2251.9 1836 66.0
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2248.8 1837 66.2
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2244.5 1854 65.5
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2242.6 1844 65.3
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2242.6 1844 65.3
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2238.0 1839 65.8
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2235.7 1838 64.6
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2223.0 1837 65.3
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2207.6 1834 65.5
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2184.8 1835 64.0
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2174.1 1839 64.4
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2168.3 1828 63.6
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2164.8 1834 64.3
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2154.4 1831 63.7
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2136.3 1730 65.1
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2125.9 1835 63.4
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2125.5 1856 62.3
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2100.5 1826 63.3
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2099.7 1830 62.7
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2068.5 1879 60.7
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2066.2 1829 62.1
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2063.9 1846 62.0
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2056.6 1833 61.2
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2050.8 1837 61.5
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2047.3 1833 61.5
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2037.7 1828 62.4
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2029.6 1839 60.9
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2013.8 1840 60.6
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2013.8 1839 60.8
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2009.2 1835 60.9
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1967.2 1841 60.1
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1953.7 1769 60.9
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1945.6 1832 60.7
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1924.1 1824 59.3
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1917.5 1823 59.1
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1917.5 1823 59.1
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1910.2 1845 58.6
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1878.6 1837 55.7
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1857.4 1820 57.7
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1832.8 1841 55.0
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1721.1 1691 56.6
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1688.3 1369 65.8
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1649.8 1490 60.7
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1594.7 1800 52.2
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1569.3 1219 67.7
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1546.9 1344 61.8
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1540.0 1336 62.1
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1528.8 1571 55.8
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1520.4 1376 61.0
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1436.8 1305 59.7
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1431.8 1801 49.2
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1370.5 1985 43.9
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1362.8 1195 60.8
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1272.7 1366 54.5
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1261.1 1224 60.0
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1245.0 1831 42.8
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1215.7 984 66.2
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1198.0 1944 40.1
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1197.2 1928 40.9
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1185.2 1143 58.3
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1169.1 1981 38.9
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 2.9e-290 1003.0 872 62.0
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 2.3e-255 887.1 1385 42.1
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.8e-234 816.6 633 65.9
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.6e-224 784.6 1355 40.1
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 3.5e-203 713.8 478 75.7
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 3.0e-199 700.7 526 70.0
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 5.9e-195 686.4 487 76.0
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.2e-182 645.6 466 71.2
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.4e-180 638.6 613 57.4
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 4.7e-168 597.0 375 81.3
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 6.2e-160 570.1 622 51.6
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 5.2e-159 567.0 429 64.8
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 3.4e-158 564.3 331 87.3
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 1.4e-156 558.9 360 77.2
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 8.4e-149 533.1 556 54.3
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.9e-148 531.9 361 73.7
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 2.9e-141 508.1 482 59.3
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.6e-136 492.3 389 69.7
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.2e-124 451.4 324 67.3
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.2e-118 433.0 442 56.1
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 2.8e-112 411.8 261 84.7
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 8.5e-109 400.2 400 54.5
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 7.4e-105 387.1 259 75.3
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.0e-70 272.7 302 57.0
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.0e-69 270.4 299 56.9
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 2.1e-67 262.7 306 56.5
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 3.2e-47 195.7 123 78.0
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.1e-42 180.6 141 63.1
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 2.4e-23 116.3 103 60.2
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 5.1e-21 108.6 70 80.0
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 6.9e-18 98.2 71 70.4
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 7.6e-17 94.7 70 67.1
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.1e-15 90.9 70 64.3
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 1.9e-15 90.1 203 30.0
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.6e-14 87.0 77 62.3
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 3.0e-13 82.8 67 61.2
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 8.7e-13 81.3 67 59.7
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 3.3e-12 79.3 39 82.1
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.6e-11 77.0 34 91.2
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.6e-11 77.0 34 91.2
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.6e-11 77.0 34 91.2
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.6e-11 77.0 34 91.2
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.6e-11 77.0 34 91.2
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 6.2e-11 75.1 94 51.1
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 1.4e-10 73.9 445 22.0
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 7.6e-09 68.2 179 29.1
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 3.2e-07 62.8 37 81.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 9.3e-07 61.2 185 28.1


User provided reference genes

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