Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 7.8e-168 594.0 357 100.0
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 8.4e-146 520.8 313 95.8
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.7e-109 400.2 353 67.4
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 8.5e-106 387.9 355 65.1
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 8.5e-106 387.9 345 67.0
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 4.2e-105 385.6 355 64.8
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 8.8e-103 377.9 363 63.1
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 4.8e-101 372.1 353 62.9
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.4e-100 370.5 367 62.4
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 7.7e-99 364.8 354 61.9
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 8.5e-98 361.3 355 63.4
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 4.2e-97 359.0 361 59.6
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 9.4e-97 357.8 353 64.9
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 2.7e-96 356.3 359 65.5
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 6.8e-95 351.7 309 66.3
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 6.8e-95 351.7 354 60.7
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 1.2e-94 350.9 355 63.9
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.5e-94 350.5 355 66.2
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 2.0e-94 350.1 349 61.3
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.3e-93 347.4 364 65.1
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.8e-93 345.5 364 64.8
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 1.4e-92 344.0 369 61.2
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.8e-92 343.6 320 64.4
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 3.1e-92 342.8 366 60.1
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 4.1e-92 342.4 306 65.4
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 4.5e-91 339.0 364 58.8
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 7.7e-91 338.2 348 58.9
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.3e-90 337.4 358 61.5
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 2.2e-90 336.7 318 62.9
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 3.8e-90 335.9 354 59.6
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.1e-89 334.3 344 59.3
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 3.2e-89 332.8 355 58.6
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.2e-88 330.9 308 63.6
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.6e-88 330.5 304 64.5
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.8e-88 329.7 354 64.1
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 4.7e-88 328.9 312 63.5
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 6.1e-88 328.6 308 63.6
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 4.0e-87 325.9 353 61.2
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 2.0e-86 323.6 379 55.7
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 3.4e-86 322.8 361 56.0
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.3e-85 320.9 351 57.8
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.3e-85 320.9 390 54.1
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.7e-85 320.5 282 65.2
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 4.9e-85 318.9 362 55.5
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 2.4e-84 316.6 300 62.3
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.1e-84 316.2 344 57.6
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 4.1e-84 315.8 354 58.8
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.4e-84 315.5 351 57.8
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 5.4e-84 315.5 356 56.5
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.3e-82 310.8 341 57.8
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.7e-82 310.5 344 57.6
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.3e-82 310.1 365 58.4
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 2.5e-81 306.6 356 57.6
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 8.0e-80 301.6 331 59.5
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.7e-78 295.4 283 61.8
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 7.5e-78 295.0 292 61.3
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.9e-77 293.1 310 59.4
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 2.9e-77 293.1 311 59.5
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 8.3e-77 291.6 313 61.0
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.1e-76 291.2 345 62.9
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.4e-76 290.8 348 55.5
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 5.4e-76 288.9 275 60.0
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 9.2e-76 288.1 354 55.4
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 2.7e-75 286.6 276 61.2
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 7.8e-75 285.0 275 59.3
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.3e-74 283.5 316 60.1
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.0e-74 283.1 351 54.4
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 3.9e-74 282.7 356 52.5
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 2.5e-73 280.0 357 49.6
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 3.3e-73 279.6 306 59.5
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 5.6e-73 278.9 276 62.7
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.6e-72 277.3 356 55.3
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.6e-72 277.3 356 54.5
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.6e-72 277.3 356 54.5
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 2.1e-72 276.9 271 61.6
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.1e-72 276.9 258 63.6
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 8.0e-72 275.0 346 54.0
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 1.0e-71 274.6 373 53.1
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.4e-71 274.2 373 52.8
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 2.3e-71 273.5 361 54.3
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 2.3e-71 273.5 269 59.9
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 5.2e-71 272.3 358 52.0
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 5.2e-71 272.3 381 50.7
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.9e-71 271.6 275 58.2
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 5.8e-70 268.9 271 60.9
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.4e-68 264.2 284 56.0
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.9e-68 263.8 284 55.6
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 2.4e-68 263.5 373 52.8
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 2.0e-67 260.4 346 52.9
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 6.0e-67 258.8 291 56.7
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.3e-66 257.7 364 47.3
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 5.0e-66 255.8 276 55.4
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.1e-65 254.6 363 47.4
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.5e-65 254.2 284 54.9
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 8.9e-63 245.0 320 51.2
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 3.4e-62 243.0 331 49.8
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.5e-62 241.9 231 62.3
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 3.2e-60 236.5 284 58.5
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 9.2e-60 235.0 332 50.9
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.2e-59 234.6 369 48.0
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 1.6e-59 234.2 212 63.7
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.1e-59 233.8 300 54.0
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 4.6e-59 232.6 327 51.1
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-57 228.0 373 49.1
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 5.6e-57 225.7 272 52.6
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 9.5e-57 224.9 226 59.7
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.4e-55 221.1 203 65.0
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.8e-55 220.7 365 49.0
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 2.3e-55 220.3 361 49.6
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 2.0e-54 217.2 244 54.5
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 2.0e-54 217.2 214 58.4
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 5.8e-54 215.7 212 58.5
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 5.8e-54 215.7 212 58.5
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 7.6e-54 215.3 349 43.8
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 7.6e-54 215.3 349 43.8
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 3.8e-53 213.0 247 52.2
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 2.3e-50 203.8 363 47.4
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.3e-49 199.5 257 51.0
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.8e-47 194.1 359 41.2
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.5e-46 191.0 301 43.2
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.5e-46 191.0 498 34.9
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 2.6e-46 190.3 252 51.2
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 5.8e-46 189.1 162 65.4
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.2e-45 187.2 192 59.4
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 2.9e-45 186.8 315 41.6
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 1.1e-44 184.9 351 45.6
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 2.5e-41 173.7 355 41.1
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.6e-40 171.0 175 58.9
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 4.0e-39 166.4 322 40.1
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 5.8e-38 162.5 158 60.1
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 7.6e-38 162.2 314 41.7
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.4e-36 157.9 311 41.8
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 5.1e-34 149.4 159 60.4
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 5.8e-22 109.4 146 47.3
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.3e-21 108.2 195 48.2
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.2e-20 103.6 94 63.8
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 7.9e-19 99.0 189 37.6
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 2.5e-12 77.4 56 66.1
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 5.5e-12 76.3 100 48.0
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 4.6e-11 73.2 101 50.5
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.1e-09 68.6 52 69.2
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.7e-08 64.7 99 61.6
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.2e-08 64.3 99 61.6
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.7e-08 63.5 99 59.6
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.8e-07 61.2 99 59.6
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 2.4e-07 60.8 58 67.2


User provided reference genes

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