Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.2e-187 659.1 389 100.0
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 3.8e-168 595.1 389 90.7
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 2.0e-84 317.0 403 57.1
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.0e-83 314.7 369 55.0
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.4e-82 310.8 378 57.1
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 8.5e-75 285.0 397 51.1
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.4e-74 284.3 391 51.2
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.5e-74 283.5 392 50.3
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.2e-74 283.1 397 48.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.5e-74 282.3 397 48.9
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.4e-72 277.7 409 48.7
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.4e-72 277.7 399 48.6
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.1e-72 275.8 397 48.4
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 5.1e-72 275.8 404 49.0
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.1e-71 274.6 376 48.9
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.0e-71 273.9 401 49.4
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.0e-71 273.9 378 50.5
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 5.3e-69 265.8 406 49.8
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 6.9e-69 265.4 392 53.3
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.5e-68 262.7 418 49.5
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 4.5e-68 262.7 400 47.2
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 4.5e-68 262.7 406 46.1
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.7e-67 260.8 397 46.1
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 6.5e-67 258.8 398 49.5
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.4e-66 257.7 344 53.8
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.9e-66 257.3 362 49.4
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.9e-66 257.3 390 45.9
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 9.4e-66 255.0 367 47.7
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 6.1e-65 252.3 420 44.3
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.8e-64 250.8 404 45.3
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 3.0e-64 250.0 373 48.5
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.1e-63 248.1 396 45.2
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.5e-63 247.7 392 47.7
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.5e-63 247.7 388 45.1
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.3e-63 246.5 396 45.5
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 7.4e-63 245.4 344 51.2
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 9.7e-63 245.0 351 47.9
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.3e-62 244.6 397 46.6
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.2e-62 243.8 348 48.3
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.2e-62 243.8 357 49.0
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.8e-62 243.4 389 45.8
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.8e-62 243.4 388 45.4
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 3.7e-62 243.0 357 46.2
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 6.3e-62 242.3 370 45.9
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 8.2e-62 241.9 374 48.9
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 5.3e-61 239.2 336 46.7
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.3e-61 239.2 402 44.8
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.0e-60 237.3 367 45.0
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 2.0e-60 237.3 341 46.6
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 3.5e-60 236.5 341 49.6
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.7e-60 235.3 389 45.8
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.9e-59 233.4 340 49.4
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 6.5e-59 232.3 388 44.1
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.9e-58 230.7 412 44.4
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.2e-57 228.0 396 46.0
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 2.7e-57 226.9 423 44.0
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.6e-57 226.5 412 43.2
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.0e-56 224.9 383 45.7
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.4e-56 224.6 385 46.8
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.8e-56 224.2 356 46.6
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.3e-56 223.8 359 44.6
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.3e-56 223.8 410 45.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.0e-56 223.4 381 46.5
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 8.8e-56 221.9 411 41.6
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 7.5e-55 218.8 402 44.8
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 9.7e-55 218.4 394 45.2
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.7e-54 217.6 395 43.3
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.8e-53 214.2 370 44.1
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.4e-53 213.8 373 42.6
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 9.1e-53 211.8 397 41.3
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 9.1e-53 211.8 344 44.2
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.2e-52 211.5 379 43.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.6e-52 211.1 234 56.0
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.0e-52 210.7 382 43.7
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.9e-51 206.8 404 44.8
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.9e-51 206.8 404 44.8
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.9e-51 206.8 404 44.8
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.1e-50 204.9 365 43.8
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.1e-50 204.9 375 42.1
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 3.2e-50 203.4 407 42.3
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 7.2e-50 202.2 388 43.6
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 9.4e-50 201.8 375 41.9
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.7e-49 200.3 373 42.4
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 3.6e-49 199.9 402 41.8
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 4.7e-49 199.5 394 43.4
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 6.1e-49 199.1 406 44.6
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 6.1e-49 199.1 406 44.6
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.0e-48 198.4 394 43.4
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.4e-48 198.0 400 42.5
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.4e-48 198.0 400 42.5
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.0e-48 196.8 405 39.8
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 5.2e-48 196.1 376 41.2
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 6.8e-48 195.7 367 43.1
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.0e-47 194.1 399 44.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.7e-46 191.0 370 41.9
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.7e-46 191.0 349 41.8
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 2.2e-46 190.7 404 41.1
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.8e-46 189.5 406 43.8
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.1e-45 188.3 356 42.1
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.1e-45 188.3 409 42.3
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.1e-45 186.8 358 43.6
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.1e-45 186.8 371 44.2
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 4.1e-45 186.4 380 43.2
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 4.1e-45 186.4 380 43.2
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 9.1e-45 185.3 341 40.8
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.2e-44 184.9 430 38.1
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 4.5e-44 183.0 355 44.2
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 5.9e-44 182.6 353 38.5
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.0e-43 181.8 212 53.8
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.3e-43 181.4 383 43.1
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.9e-43 180.3 354 41.0
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-42 177.9 381 42.3
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.5e-42 177.9 381 42.3
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.2e-42 176.4 399 40.1
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.4e-42 175.3 260 50.8
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 2.1e-41 174.1 421 38.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 3.6e-41 173.3 391 37.3
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 6.1e-41 172.6 392 41.3
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 8.0e-41 172.2 355 38.3
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.0e-40 171.8 395 39.7
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.5e-39 167.9 350 43.7
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.4e-39 166.8 378 39.7
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 3.4e-39 166.8 191 56.5
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.4e-37 161.4 275 46.9
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.1e-37 160.2 379 38.8
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.1e-37 159.8 405 38.5
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 5.4e-37 159.5 190 55.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.6e-36 157.9 375 36.5
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.8e-32 144.4 423 36.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.0e-31 141.0 424 33.3
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.2e-30 137.5 376 37.0
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 4.9e-30 136.3 377 35.0
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 6.6e-27 125.9 308 37.3
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.2e-24 116.3 410 34.9
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.5e-23 114.8 231 41.1
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 3.4e-23 113.6 379 34.6
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.9e-19 100.1 244 39.3
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 1.6e-17 94.7 78 64.1
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.2e-13 80.5 346 30.9
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 4.6e-12 76.6 225 35.1
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 6.6e-11 72.8 192 34.4
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 3.1e-08 63.9 82 48.8
MBI10_g23168_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 2.6e-07 60.8 164 36.6
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 3.4e-07 60.5 148 38.5


User provided reference genes

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