Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 4.2e-276 954.1 505 100.0
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 8.0e-243 843.6 461 97.4
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 4.1e-106 389.4 458 48.9
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 4.6e-97 359.4 463 43.6
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.0e-96 358.2 458 44.8
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 2.3e-96 357.1 459 44.2
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 8.6e-96 355.1 459 44.2
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.6e-94 349.7 458 44.8
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 4.0e-93 346.3 456 43.0
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 5.8e-92 342.4 458 43.9
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.3e-91 341.3 493 43.2
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 2.9e-91 340.1 460 44.1
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 9.3e-90 335.1 458 42.6
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 4.6e-89 332.8 458 42.4
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 5.1e-88 329.3 458 42.4
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 5.1e-88 329.3 463 42.1
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 5.1e-88 329.3 460 42.6
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 3.3e-87 326.6 459 41.6
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 4.8e-86 322.8 459 40.7
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 6.2e-86 322.4 459 41.4
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.1e-85 320.1 459 41.4
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 4.0e-85 319.7 460 41.7
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.0e-84 317.4 508 39.8
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 3.4e-84 316.6 464 40.5
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 3.8e-83 313.2 460 41.1
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 4.9e-83 312.8 463 40.4
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 4.9e-83 312.8 542 37.8
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 8.4e-83 312.0 463 38.2
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 8.4e-83 312.0 499 38.5
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.9e-82 310.8 462 40.5
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.4e-82 309.3 456 41.2
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 3.5e-81 306.6 461 39.5
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 6.0e-81 305.8 460 39.8
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.0e-81 305.8 456 40.8
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.0e-80 305.1 460 40.0
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.3e-80 303.9 460 39.8
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.1e-79 301.6 461 39.9
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.5e-79 301.2 457 39.8
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.6e-78 297.7 458 39.3
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 3.6e-78 296.6 457 39.8
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 4.8e-78 296.2 478 39.1
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.1e-77 295.0 461 38.8
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 1.4e-77 294.7 478 38.9
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 2.4e-77 293.9 423 41.1
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 6.9e-77 292.4 478 38.7
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 9.9e-76 288.5 458 39.3
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 2.2e-75 287.3 396 42.4
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 2.2e-75 287.3 470 38.1
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 4.9e-75 286.2 460 38.9
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 4.9e-75 286.2 457 38.3
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 6.4e-75 285.8 471 38.4
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.5e-73 280.0 457 38.1
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.3e-72 278.1 457 37.9
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.3e-72 278.1 457 37.9
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.3e-70 271.6 462 36.8
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 4.0e-69 266.5 496 34.9
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 4.0e-69 266.5 466 38.0
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.2e-68 265.0 368 42.9
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.4e-68 263.5 466 36.3
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.3e-67 261.5 466 36.5
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.3e-67 261.5 467 37.9
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.9e-67 260.4 458 36.5
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 3.8e-67 260.0 464 37.1
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 8.4e-67 258.8 453 36.9
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.9e-66 257.7 456 36.4
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 2.7e-65 253.8 462 35.9
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.0e-64 250.4 459 36.6
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.7e-64 249.2 459 36.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.9e-63 247.7 455 35.8
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 3.1e-61 240.4 378 39.4
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 5.3e-61 239.6 452 35.0
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.5e-60 236.5 464 36.0
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.0e-59 235.3 459 34.6
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.3e-59 235.0 456 34.9
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 1.3e-59 235.0 470 33.4
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.7e-59 234.6 490 34.9
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 3.8e-59 233.4 456 34.6
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 5.0e-59 233.0 471 34.0
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 5.0e-59 233.0 450 34.4
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 6.5e-59 232.6 366 38.3
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 1.4e-58 231.5 454 33.3
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.6e-57 228.0 366 39.9
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 4.6e-57 226.5 468 34.2
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 4.6e-57 226.5 450 35.6
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.0e-56 225.3 457 34.8
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 2.3e-56 224.2 470 32.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.3e-56 224.2 470 32.1
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 3.0e-56 223.8 375 38.4
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.0e-56 223.8 465 33.3
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.5e-55 221.5 470 32.1
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 9.7e-55 218.8 446 33.4
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 2.2e-54 217.6 465 31.8
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 2.8e-54 217.2 422 36.0
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 3.7e-54 216.9 455 34.7
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 6.3e-54 216.1 228 49.6
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 8.2e-54 215.7 455 31.4
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 3.1e-53 213.8 465 31.4
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.2e-52 211.8 457 33.5
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.9e-51 207.2 455 31.0
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.8e-51 206.8 471 31.2
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 8.5e-51 205.7 468 32.5
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.1e-50 205.3 496 30.2
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.7e-49 200.7 501 29.7
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 7.9e-49 199.1 192 53.6
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.0e-48 198.7 458 33.2
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 2.3e-48 197.6 443 31.6
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 8.8e-48 195.7 459 32.2
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 1.5e-47 194.9 454 31.7
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.3e-46 191.8 471 29.5
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.2e-46 191.0 193 50.8
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.8e-46 190.7 464 32.1
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 3.7e-46 190.3 459 31.8
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.7e-46 190.3 371 34.0
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 6.3e-46 189.5 461 31.9
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.1e-45 188.7 451 31.5
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.8e-45 188.0 266 39.8
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.8e-45 188.0 231 43.7
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.1e-45 187.2 460 32.6
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 3.1e-45 187.2 460 32.6
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 9.1e-45 185.7 459 31.2
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.2e-44 185.3 462 31.8
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 7.7e-44 182.6 456 31.1
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 7.7e-44 182.6 459 31.4
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 1.0e-43 182.2 459 30.9
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.7e-43 181.4 453 31.1
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.7e-43 181.4 453 31.1
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 3.8e-43 180.3 458 30.6
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 8.5e-43 179.1 369 33.1
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 7.2e-42 176.0 453 30.9
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 7.2e-42 176.0 478 28.9
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.7e-41 174.1 453 30.7
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 3.6e-41 173.7 463 30.0
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 3.6e-41 173.7 234 42.3
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.4e-40 171.8 388 32.0
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 6.7e-40 169.5 370 32.4
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 8.8e-40 169.1 472 29.4
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.5e-39 168.3 313 36.4
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 2.2e-38 164.5 417 30.5
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 5.9e-36 156.4 194 45.4
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 1.5e-34 151.8 458 28.6
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 3.2e-34 150.6 238 35.7
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.8e-32 144.8 496 28.4
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 6.7e-32 142.9 358 27.4
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.6e-31 141.0 232 34.5
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 3.3e-31 140.6 426 29.8
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 4.5e-28 130.2 158 48.7
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 5.2e-24 116.7 319 30.1
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.3e-22 109.8 133 42.1
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 9.5e-18 95.9 270 29.3
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 1.4e-16 92.0 93 51.6
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 3.0e-16 90.9 478 22.2
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 5.2e-16 90.1 69 59.4
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 8.8e-16 89.4 128 45.3
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.0e-15 88.2 95 48.4
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.1e-13 80.9 142 37.3
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.0e-11 75.9 155 34.2
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.1e-10 72.4 100 42.0
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 9.5e-10 69.3 96 35.4
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 4.7e-09 67.0 102 39.2
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.3e-08 64.7 61 50.8
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 4.4e-07 60.5 58 51.7


User provided reference genes

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